Gene Information

Name : Sde_2743 (Sde_2743)
Accession : YP_528215.1
Strain : Saccharophagus degradans 2-40
Genome accession: NC_007912
Putative virulence/resistance : Unknown
Product : phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3472237 - 3473490 bp
Length : 1254 bp
Strand : +
Note : -

DNA sequence : 
ATGCCAAGAAAGACAACTCCGCTTACAGCTACACAAGTATCTAACGCCAAACCAAAGGAAAAGGTATACAGCCTATCCGA
TGGCGGAGGCTTGCAGCTCGTAGTAAAACCGATAGGCTCCAAGCTTTGGCAATTTGATTATTATCACCCTGCAACTAAAA
AGCGCGCTCGCTTAAGCTTTGGCCCATACCCTGAAGTTTCATTAGCTATAGCCCGAAAGCAACGGGAAGAATGCCGCAAA
CTTGTGCTCCAAGGCACAGACCCAAAAGCACATCGAGACAACGAGAGATTACAAGAACGACTCGCTCACACGGATACTCT
TAAAGCGTCAGCCAAAGCTTGGTTTGAAATTAAAAAAACGACTATCACCCCCAATTATGCTGACGATATTTGGCGATCAC
TTGAAAGGCATATATTCCCAAAACTTGGCAGTGCACCTGTAAGCAAATTAACCGCCCCCCAAATTATTGAAGTGTTAACC
CCCATTGCCGCGAAAGGCAGCCTAGAAACAGTAAAACGGCTTTGCCAACGTTTAAACGAAATCTTAATTTGGGCTGTAAA
TACCGGTAAATTACCTAGCAACCCCATATCAGGTATTCGCTACAACTTCCAAGCGCCACAAAAAAAGAATATGCCAGCAT
TAAGGCCAGAAGAACTTCCAGAGCTAATGCGCGCACTAAACACAGCTAGCATCAAACTAACCACACGCTGTTTAATCGAA
TGGCAACTTCATACCCTAACTCGCCCCTCAGAAGCAGCTGGCGCGGAGTGGAGCGAGATAGATGAAGTCCATAAAATTTG
GAGAATTCCCGCTATCCGTATGAAAAAACGCAGAGACCACGCTGTACCACTCACACCCTCGATGCTAAACCTACTCAACA
TAATGCGCCCCATAAGCGGTGATAGCGAATATATATTCCCTGCGGACAGAAGCCCTCGCAAACACACTAACGAACAAACA
GCGAACATGGCATTAAAACGCATGGGCTTCAAAGACCGCCTTGTAGCACACGGTCTACGCTCGATCGGCAGCACGGCTTT
GAACGAGCAAGGATTTGAATCAGATTTAATTGAAGCTGCGTTAGCCCATGTAGACAAAGACGATGTACGCGCTGCCTATA
ACCGCGCAGAATACATTGAGCGGCGCAGGCCAATGATGGAATGGTGGAGCACGTTAATCATTAGCGCCTCGTCAGGAGGC
ACCAGTCTCGCAAACGTCACGAATATGACACTGGGATGCAAGCATGTTAAATGA

Protein sequence : 
MPRKTTPLTATQVSNAKPKEKVYSLSDGGGLQLVVKPIGSKLWQFDYYHPATKKRARLSFGPYPEVSLAIARKQREECRK
LVLQGTDPKAHRDNERLQERLAHTDTLKASAKAWFEIKKTTITPNYADDIWRSLERHIFPKLGSAPVSKLTAPQIIEVLT
PIAAKGSLETVKRLCQRLNEILIWAVNTGKLPSNPISGIRYNFQAPQKKNMPALRPEELPELMRALNTASIKLTTRCLIE
WQLHTLTRPSEAAGAEWSEIDEVHKIWRIPAIRMKKRRDHAVPLTPSMLNLLNIMRPISGDSEYIFPADRSPRKHTNEQT
ANMALKRMGFKDRLVAHGLRSIGSTALNEQGFESDLIEAALAHVDKDDVRAAYNRAEYIERRRPMMEWWSTLIISASSGG
TSLANVTNMTLGCKHVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 7e-119 57
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 7e-119 57
int AAK20773.1 integrase Not tested VPI Protein 5e-119 57
int AAK20803.1 integrase Not tested VPI Protein 5e-119 57
unnamed AAA82714.1 integrase Not tested VPI Protein 5e-119 57
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 7e-111 52
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 2e-96 50
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 3e-96 50
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 3e-96 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sde_2743 YP_528215.1 phage integrase VFG1092 Protein 1e-96 50