Gene Information

Name : Sde_2555 (Sde_2555)
Accession : YP_528027.1
Strain : Saccharophagus degradans 2-40
Genome accession: NC_007912
Putative virulence/resistance : Virulence
Product : Two-component response regulator PilR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3241971 - 3243350 bp
Length : 1380 bp
Strand : +
Note : -

DNA sequence : 
ATGACGACACAACCAAAAGTATTGGTTATTGATGACGAGCCAGATATTCGCGAACTGCTTACTATTACCTTAAGCAGAAT
GGACATAGCTGCCGATACTGCTGCCGATGTAGCTGAAGCTAAAGCCCAGCTAAGTAAAAACAAATACAATTTATGCCTAA
CCGACATGAAACTGCCCGACGGCAACGGCATAGATATTGTGCATTATATTCAACAGCATTCGCCCAGCTTGCCGGTGGCG
CTAATAACCGCACACGGCAATATGGATATAGCAATTCAAGCCATGAAAGCTGGTGCATTTGACTTTCTAAATAAGCCCGT
CGACCTAGCCAGCCTGCGTAAACTCGTTGCCACGGCTATTGCATCTAGCGAACTACCCGAAGAGGAATGCGACGAAAATA
CTCGCATTATTGGCAAGTCTCCAGCCATACAAAAATTGACGGGCAGTATTAAAAAGCTAGCCCGCTCACAGGCGCCTGTT
TACATAAGTGGCGAATCCGGTAGCGGTAAAGAATTAGTCGCACGCTCAATCCACGAGCTTGGCCCCCGCAGCAACAAACC
GTTTATGCCCGTTAATTGCGGCGCCATCCAAAAAGAACTAATGGAAAGTGAATTGTTTGGTCACAAAAAAGGGGCTTTTA
CGGGGGCAGTGCAAGACAAACAAGGTATTTTTCAAGCTGCTGAAGGCGGTACGCTATTTCTAGATGAAGTTGCCGATTTG
CCGTTAGACATGCAAGTAAAATTACTACGTGCTATACAAGAAAAAGCGGTACGCCCCGTGGGTGCAGAAGCCGAAATAAG
CACCGATGTACGCATACTTTGCGCCACGCACAAAAACTTAGAAGAACTCGTTCAAAAAGGCGACTTCCGCCAAGATTTAT
TTTACAGACTTAACGTTATACAACTGGCCGTACCACCGCTTCGCGATCGCACAGATGACGTTGAAGTACTCGCCAAACAT
GTACTTAAAAAAATTATAGGCCCCGACGAAACACCGCCCAAATTAGATAAGAGCGCCATTAACGCGCTTAAACAATATAG
CTTCCCGGGCAACGTACGTGAGCTAGAAAATATTTTAGAGCGCGCTTACACGTTGTGTGAGGAAGATGTAATAAAAGACA
CAGACCTTCAGCTATCAAGTTCACCCAAAATAGAAAGCGCTTCTTCCTACACAGGAACGGTCAATCACTATAAACAATCC
CAGCAATACGAATCGTTGGACGACTACCTAGCAGAAATAGAAAAAGAAATATTAAGTGAAGTACTAGAACAAGTCCGCTG
GAATAAAACATTAGCAGCCAAAAAACTGGGCATCAGCTTTCGATCTTTTCGTTATCGACTAAGTAAACTCGGTTTGGCTA
AAGACTGGCAAGATGAATAG

Protein sequence : 
MTTQPKVLVIDDEPDIRELLTITLSRMDIAADTAADVAEAKAQLSKNKYNLCLTDMKLPDGNGIDIVHYIQQHSPSLPVA
LITAHGNMDIAIQAMKAGAFDFLNKPVDLASLRKLVATAIASSELPEEECDENTRIIGKSPAIQKLTGSIKKLARSQAPV
YISGESGSGKELVARSIHELGPRSNKPFMPVNCGAIQKELMESELFGHKKGAFTGAVQDKQGIFQAAEGGTLFLDEVADL
PLDMQVKLLRAIQEKAVRPVGAEAEISTDVRILCATHKNLEELVQKGDFRQDLFYRLNVIQLAVPPLRDRTDDVEVLAKH
VLKKIIGPDETPPKLDKSAINALKQYSFPGNVRELENILERAYTLCEEDVIKDTDLQLSSSPKIESASSYTGTVNHYKQS
QQYESLDDYLAEIEKEILSEVLEQVRWNKTLAAKKLGISFRSFRYRLSKLGLAKDWQDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 6e-107 50
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 6e-107 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sde_2555 YP_528027.1 Two-component response regulator PilR BAC0089 Protein 4e-70 43
Sde_2555 YP_528027.1 Two-component response regulator PilR BAC0467 Protein 3e-71 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sde_2555 YP_528027.1 Two-component response regulator PilR VFG1214 Protein 3e-134 60