Gene Information

Name : Sde_2280 (Sde_2280)
Accession : YP_527752.1
Strain : Saccharophagus degradans 2-40
Genome accession: NC_007912
Putative virulence/resistance : Resistance
Product : ABC transporter related
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2900483 - 2901184 bp
Length : 702 bp
Strand : +
Note : -

DNA sequence : 
ATGCTTACACTCAAAGACATTCATAAATCCTATGGCGCGGGCAGCCAAAAGCTACATGTTTTAAAAGGCATAGATCTACA
CATAGGCGCCGGTGAGATGGTCTCAATTATGGGCTCATCTGGCTCGGGTAAATCCACATTACTTAACATAATGGGCATTC
TAGATTCCCATGACCAAGGGCAATACACCCTAGCCGATTGTGCAATTGGCCATCACCTAAGCGAGCGGCAAGCAGCGTTT
TTACGCAACCAACACCTTGGCTTTGTATTCCAGTCTTTTAACTTATTGCCCTTTAAAAATGCCCTAGAAAACATTGCACT
ACCGCTTTACTACCGCGGCATTAACCGTAAAAAACGCAACAAACTCGCTGAGGAATATATAGAACGCGTAGGCCTTGCCG
ACCGTAAACTGCATATGCCAGGCGAACTCTCGGGCGGGCAAAAACAGCGTATCGCCATCGCTCGTGCGCTCATCTCAAAC
CCGCAAGTAATATTAGCCGATGAGCCCACCGGTGCATTGGATAGCCAAACCACCGAAGAGGTTATGCAAATATTTAAAGA
AGTAAATGCCGAAGGCAAAACCATTGTTATAGTTACCCACGAAAACGACATAGCCCAACAAACCCAAAGGCAAATTGTTT
TTAAAGATGGCAATATCTTAAGCGATAGCGCGCCAGCCACCCCTGCGGCGACAGCGAGCTAA

Protein sequence : 
MLTLKDIHKSYGAGSQKLHVLKGIDLHIGAGEMVSIMGSSGSGKSTLLNIMGILDSHDQGQYTLADCAIGHHLSERQAAF
LRNQHLGFVFQSFNLLPFKNALENIALPLYYRGINRKKRNKLAEEYIERVGLADRKLHMPGELSGGQKQRIAIARALISN
PQVILADEPTGALDSQTTEEVMQIFKEVNAEGKTIVIVTHENDIAQQTQRQIVFKDGNILSDSAPATPAATAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-34 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-34 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-34 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sde_2280 YP_527752.1 ABC transporter related NC_012469.1.7686878. Protein 2e-58 56
Sde_2280 YP_527752.1 ABC transporter related CP001581.1.gene798.p Protein 3e-35 44
Sde_2280 YP_527752.1 ABC transporter related NC_008702.1.4606598. Protein 8e-37 44