Gene Information

Name : Sde_1961 (Sde_1961)
Accession : YP_527433.1
Strain : Saccharophagus degradans 2-40
Genome accession: NC_007912
Putative virulence/resistance : Resistance
Product : Cd(II)/Pb(II)-responsive transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG0789
EC number : -
Position : 2465852 - 2466256 bp
Length : 405 bp
Strand : +
Note : -

DNA sequence : 
TTGAAAATTGGTGAGCTTGCGAAACGCAGTGGATGTTCCATTCAAACCATCCGGTATTATGAAAGGGAAGGGTTATTAAG
TTCCTCTGCCCGAAGTGATGGCAACTTTCGCCTGTACGACCATCAAGCAGAAGAGCGCTTAATGTTCATCAAGCGTTGTC
GTAGTCTTGATCTCTCTCTGCCCGAAGTGAGACATTTGCTCACGCTCAGCCAAGCACCTGGCTCCACGTGTGGCGAGGTC
AATGAGATGGTTGATCAGCATATTCAACAGGTCGAAGAAAGGATAGACGAGCTTCAAAGCCTTCATCGGCAACTACACGA
CCTCCGGAACAACTGCTCGGAAAACCGAACAGTGGAGGATTGCGGCATCATCAGGAGTCTGGTGCAGCAAAAAGGTTCGA
AGTAA

Protein sequence : 
MKIGELAKRSGCSIQTIRYYEREGLLSSSARSDGNFRLYDHQAEERLMFIKRCRSLDLSLPEVRHLLTLSQAPGSTCGEV
NEMVDQHIQQVEERIDELQSLHRQLHDLRNNCSENRTVEDCGIIRSLVQQKGSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C98 AAN62191.1 putative transcriptional regulator Not tested PAGI-2(C) Protein 7e-35 53
ACICU_00234 YP_001844893.1 transcriptional regulator Not tested AbaR20 Protein 2e-29 44
cadR ACN81029.1 MerR family transcriptional regulator Not tested AbaR5 Protein 2e-29 44
pbrR CAJ77094.1 Transcriptional regulator Not tested AbaR1 Protein 1e-29 44
cadR AGK36653.1 MerR family transcriptional regulator Not tested AbaR26 Protein 1e-29 44
cadR ACS32041.1 MerR family transcriptional regulator Not tested AbaR5 Protein 4e-29 43
cadR ADZ05769.1 MerR family transcriptional regulator Not tested AbaR11 Protein 3e-29 43
pbrR CAJ77021.1 transcription regulator Not tested AbaR1 Protein 3e-29 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sde_1961 YP_527433.1 Cd(II)/Pb(II)-responsive transcriptional regulator BAC0058 Protein 6e-34 52
Sde_1961 YP_527433.1 Cd(II)/Pb(II)-responsive transcriptional regulator BAC0301 Protein 4e-28 50