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Name : Sde_1542 (Sde_1542) Accession : YP_527016.1 Strain : Saccharophagus degradans 2-40 Genome accession: NC_007912 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 1987808 - 1989745 bp Length : 1938 bp Strand : + Note : - DNA sequence : ATGCGACTATTTATTGCCGAAAAACCCAGCCTAGGGCGCGCTATCGCCGACGTTTTACCAAAACCCCACTCGCGGGGTGA TGGTTTTATTCGGTGCGGCAATGGCGACGTTGTTAGTTGGTGTATAGGGCATTTGTTAGAGCAAGCCGAGCCCGAAGCCT ATAACCCAGTGTTCAAGCAGTGGCGTTTAGAGCATTTGCCTATCATTCCCGATCAATGGCAGCTAAAGCCAAAATCTAAA ACCCGTAAGCAGCTAACGGCTTTGCGCAAATTGGTGAAGGAAGCCACCTGCATTGTGCACGCAGGCGACCCAGATCGTGA AGGGCAGTTATTAGTCGACCAAGTAATTGATTTTCTTGGGGTGAAAGGTGCAAAGCGCGAATCCGTTCAGCGCTGTTTAA TTAACGATCTCAACCCCGCTGCCGTTAAACGCTCCCTCGATACATTGCGGTCAAATAAAGAATTTATTCCATTAGCCACG TCGGCGCTTGCTCGTTCGCGTGCAGATTGGTTATACGGTATTAACATGACTCGTGCCTATACCTTGCAAGGGCGTAAAGT GGGGTACGAAGGGCTGCTTTCTGTTGGGCGTGTGCAAACGCCCATACTGGGTATGGTTGTAGAGCGCGATAGGGCAATTG AAGAGTTTGTTTCAAAACCGTTTTACGAAGTATTAGCACATTTAACCACTTTAACTGGTGAGCCGACTGCATTTACCGCC AAATGGTTGCCAAGCGAGGCATGCGAGCCCTATATGGATGAAGATGGGCGTGTACTTAGCAAGAAGTTAGCCCAAAACGT TATTGCGCGCATAACGGGTGAAAATGGCGTTGTCGAAAAAGTAGATAAAAAAGCCAAAGCACAAGCCGCGCCGCTTCCTT ATAATTTGTCGTCGTTACAAATAGATGCCGCAAAACGGTTTGGCTTTGCCGCACAAAAAGTGCTGGATATTTGCCAAAAC CTATACGAAAAACACAAGCTTATTACTTACCCGCGTTCAGATAGCCGCTACTTGCCGGCGGATCATTGGCATCAAGCAAA TGACGTTTTGCAAGCAATATCTGCCAATGTTGCCGAGCTAGTGCAGTCGGTGAGCGGTGCAAACAGCAAGTTAAAAAGTA AAGCATGGAATGATGCTAAAGTGGATGCGCACCATGCGATTATTCCAACTGCTAAGAAAGTATCGTTTTCATCGATAACC AGCGAAGAGCAAAAGGTATACAGCCTAATTGCTCGGCAATATGTTTGTCAGTTCTACCCCAAATGGGAATATTCTGACAC GGTAATTCACCTAAAAATAGCTGGCGGACAATTTGTATCTAAAGCTCGTTTAACACATAAACAGGGTTGGAAGGTACTGT TTGAACGAAAGGGAGGTGAGCCTAACCCTAAAGATGACGACGAGTTTCCCTCACTTACGCTACCGGATTTACACGTGGGG CAGAGTGTTGCCTGCAGGCAGGGCGAGTTACTAGAAAAGCAAACCCAACCCCCCAAATATTTTACCGATGCCAGCCTGCT TGCCGCTATGACGGGCATCGCGCGTTACGTGACCGACCCCGATATTAAGAAAATACTTAAAGATACCGATGGTTTAGGTA CCGAAGCGACACGCGCAGGCATTATCGAATTGCTATTTAAGCGCAATTTTCTTGTGCGAAAAGGCAAGCAAATACACTCC ACCCCCGCAGCCAGGGGCTTGGTAGCGGCCTTGCCTAGCTCCGCCACAACACCAGATATGACCGCCCAGTGGGAATTGGT ATTAAACGCAATTTCTATACGCGAAGCCCAATACACAACTTTTATGAAGCCATTGGTTGCTAGTTTGCAAACCCTTATTG CCGAGAGCCAGCGCAATTTGCCAATAGGCCTTAAAGGTGTTGCCGCTAAACCCAAGGCCTTTAAACGCAGGCGCAAGGTA AAAGCCAAGTCTGTTTAG Protein sequence : MRLFIAEKPSLGRAIADVLPKPHSRGDGFIRCGNGDVVSWCIGHLLEQAEPEAYNPVFKQWRLEHLPIIPDQWQLKPKSK TRKQLTALRKLVKEATCIVHAGDPDREGQLLVDQVIDFLGVKGAKRESVQRCLINDLNPAAVKRSLDTLRSNKEFIPLAT SALARSRADWLYGINMTRAYTLQGRKVGYEGLLSVGRVQTPILGMVVERDRAIEEFVSKPFYEVLAHLTTLTGEPTAFTA KWLPSEACEPYMDEDGRVLSKKLAQNVIARITGENGVVEKVDKKAKAQAAPLPYNLSSLQIDAAKRFGFAAQKVLDICQN LYEKHKLITYPRSDSRYLPADHWHQANDVLQAISANVAELVQSVSGANSKLKSKAWNDAKVDAHHAIIPTAKKVSFSSIT SEEQKVYSLIARQYVCQFYPKWEYSDTVIHLKIAGGQFVSKARLTHKQGWKVLFERKGGEPNPKDDDEFPSLTLPDLHVG QSVACRQGELLEKQTQPPKYFTDASLLAAMTGIARYVTDPDIKKILKDTDGLGTEATRAGIIELLFKRNFLVRKGKQIHS TPAARGLVAALPSSATTPDMTAQWELVLNAISIREAQYTTFMKPLVASLQTLIAESQRNLPIGLKGVAAKPKAFKRRRKV KAKSV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 3e-107 | 42 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 7e-115 | 41 |
