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Name : Sde_1217 (Sde_1217) Accession : YP_526691.1 Strain : Saccharophagus degradans 2-40 Genome accession: NC_007912 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1564187 - 1565695 bp Length : 1509 bp Strand : + Note : - DNA sequence : ATGAGCGATTCACAAACACCAATTAATACCGATGACGAAAATAAATTAGTAGCAGAGCGCCGCGCCAAGTTAGCGGCAAT TCGCGAGCAGGGCAATGCGTTCCCGAATGAGTTTCGTCCGCAAAATCAAGCGCAAGATTTACAAGAAAGCCATGGCGATA AAACTAAAGAGGCTTTAGAAGAAGCGGCTGAAGTGGTGAGTGTGGCCGGTCGTATTATTCGCAACCGCGGTGCGTTTATG GAGCTGCAAGATGGCAGCGGCCGCATCCAGCTATACGTAACCAAAGAAGCGCGTCCGTTCGCGAAGTCGTTGGACTTGGG CGACATTGTTGGTGCAAAAGGTGTGCTGCATAAGTCCGGTAAAGGCGACTTGTATGTAAGCTTAGATGAATACCAGTTGC TTACTAAGGCATTGCGCCCGCTACCGGATAAGTTCCATGGATTGGCTGACCAAGAAATGCGTTATCGTCAGCGCTATGTG GATTTAATTGCAAACCCAGAAGTGCGAAAAACCTTTGTTACTCGATCGCGCGTTGTGCAATTTATTCGAAACTATTTAAA CGAAAAAGCGTTTTTAGAAGTAGAAACGCCCATGCTGCAAACTATTCCTGGTGGTGCGTCTGCACGCCCATTTATTACGC ACCACAATGCGCTAGATATGGATATGTATTTGCGCATCGCACCCGAGCTTTACCTTAAGCGTTTGGTGGTAGGTGGTTTC GAAAGGGTATACGAGATTAACCGCAACTTCCGCAACGAAGGGTTATCTACTCGTCACAATCCAGAATTTACTATGTTGGA GTTTTATCAGGCTTACGCGGATTACAATGACCTGATGGACTTAACCGAAGACATGCTGCGCAACCTAGCTCAAACTGTGT TAGGCGATACGAAAGTTGTGAATACGTTGCCAAGCAAAGGCGACGACGAGCCAGAAACCGTTACCTACGACTTTGCTCAG CCGTTTACACGTCTATCTGTGTTTAACTCTATTTTGCAGTACAACCCAGAATTAAAAGCAGAGAATATCGATACCCTTGA GGCCGCGCGTGAAGTAGCTAAAAACCTCGGTGTTCAGCTAAAAGACAGCTACGGTTTAGGCAAGGTTCAAATCGAGATAT TCGAGAAAACCGTTGAGCACAGATTAATTCAGCCAACTTTTATTACAGAGTACCCAACCGAGGTATCTCCACTTGCTCGT CGAAGCGACAGTAACCCTTTTGTTACCGATCGTTTTGAGTTCTTTGTGGGTGGTCGTGAAATTGCTAATGGTTTTTCGGA GCTTAACGATGCTGAAGATCAGGCGCAGCGCTTTAAAGAGCAGGTTGCCGAAAAAGACGCCGGCGATGACGAGGCTATGC ATTACGATGCCGACTATGTGCGAGCACTTGAATACGGTTTGCCGCCAACTGCGGGTGAAGGTATAGGTATCGATCGTTTG GTTATGTTACTAACCGATTCTCCATCTATTCGCGACGTATTGTTGTTCCCGCATATGCGTCCTGAGTAA Protein sequence : MSDSQTPINTDDENKLVAERRAKLAAIREQGNAFPNEFRPQNQAQDLQESHGDKTKEALEEAAEVVSVAGRIIRNRGAFM ELQDGSGRIQLYVTKEARPFAKSLDLGDIVGAKGVLHKSGKGDLYVSLDEYQLLTKALRPLPDKFHGLADQEMRYRQRYV DLIANPEVRKTFVTRSRVVQFIRNYLNEKAFLEVETPMLQTIPGGASARPFITHHNALDMDMYLRIAPELYLKRLVVGGF ERVYEINRNFRNEGLSTRHNPEFTMLEFYQAYADYNDLMDLTEDMLRNLAQTVLGDTKVVNTLPSKGDDEPETVTYDFAQ PFTRLSVFNSILQYNPELKAENIDTLEAAREVAKNLGVQLKDSYGLGKVQIEIFEKTVEHRLIQPTFITEYPTEVSPLAR RSDSNPFVTDRFEFFVGGREIANGFSELNDAEDQAQRFKEQVAEKDAGDDEAMHYDADYVRALEYGLPPTAGEGIGIDRL VMLLTDSPSIRDVLLFPHMRPE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 7e-135 | 58 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 3e-83 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sde_1217 | YP_526691.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-135 | 58 |
