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Name : Sde_1060 (Sde_1060) Accession : YP_526534.1 Strain : Saccharophagus degradans 2-40 Genome accession: NC_007912 Putative virulence/resistance : Unknown Product : primary replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : 3.6.1.- Position : 1359158 - 1360624 bp Length : 1467 bp Strand : + Note : - DNA sequence : ATGAGTGAATTTGAGCCTACCGATTATGCGGGTTACGACGATATCCCCGCAGATATGGAGCACCACTTAGATGTGCCGGA TACCGGTGTTGAAAGTGAATCGGCTTCATCTCACTCAATTCTGCCCCATTCTGTAGAGGCAGAGCAGTCTGTATTAGGCG GCTTGCTGCAAGAAGCCTCTAATTTTGATTCGGTAAGTGAAATACTTTCCGAGAAAGACTTTTTTAAAGCCCCGCATAGA AAAATATTCCGCGCTATGGCGCAATTGATGGAGCGCGAACAGCCCATCGATGTTATTACCGTATCTGAATTTTTAAGCGC CGAAGATGAATTGGTTGGTGCCGGTGGCTTAGATTACCTCTCCGACTTAGCAACAGAAGTGCCGAGCAGTGCAAACGTTG TGGCCTACGCCAAAATCGTGCGCGAGCGCGCCACCCTCAGGCAGTTGATTTCCGCCGCTACTGAAATAAGTAAAGCGAGC TATAACCCCGGTGGTTTAGCGTCAGATGAGCTACTGCAGCTAGCGGAAAAGCGCGTATTAGAAATATCCGAAGAGCGTCC AAAAGAGGGCGGCTTTGTTGATGTTAACGCGCTGCTAAAGCAAACCATCGAGAAGATCGACTTCTTATTTAATTCCGAAG ACGATCTCACCGGTATTCCTACCGGTATTCAAGAATTAGACGAAAAAACCTCTGGCTGGCAGTCGGGTGAGCTTGTTATT TTGGCGGCCCGTCCATCTATGGGTAAAACAGCCTTGGCGCTTAATTTTGTTGAGGCGGCGGTGTTCTCCCGCGAGCAACA GCCATGCCTAGTATTCAGCCTAGAGATGCCCGCGGATGCGCTGGTTATGCGGATGCTATCTTCCGTAGGGCGCATCGATC AAGGGCGCTTGCGCAACGGCTCGCTAATCGAAGAAGATTGGCCCAAGCTTGAAATGGCGGCGCGCAAGCTAAAAGATAAA AAGTTATTTATCGACGATACCGCGGGCCTGTCGCCAAACGAAGTGCGCGCACGGGTGAAGCGTATTGTGCGCGAGCACGG CAACCCCTCTATGATCATGGTGGATTACCTTCAGCTTATGCAGGTGCCTGGGTCCACCGAAGGGCGAACGCAAGAAATTT CCGAAATATCGCGCTCTATGAAGGCGCTGGCGAAAGAATACGAATGCCCTGTGGTGTGCTTATCCCAGCTTAACCGTGGT GTGGAGCAGCGCCCCAATAAGCGCCCAATGAACTCCGACTTGCGGGAATCCGGTGCGATCGAGCAGGATGCGGACGTTAT TCTGTTTATATATCGCGATGAGTACTACAACGAAGACAGTCAAGAAAAAGGCGTAGCCGAGCTGATTATCGGCAAGCAGC GTAATGGTGAGATTGGTACCTGTCGAGCGGCGTTTGTGGGTAAATTCACACGCTTTGACAACCTAGCTCCAGATTATTAT CCGCCTGGCGGCGGTGGTGGCGACTAG Protein sequence : MSEFEPTDYAGYDDIPADMEHHLDVPDTGVESESASSHSILPHSVEAEQSVLGGLLQEASNFDSVSEILSEKDFFKAPHR KIFRAMAQLMEREQPIDVITVSEFLSAEDELVGAGGLDYLSDLATEVPSSANVVAYAKIVRERATLRQLISAATEISKAS YNPGGLASDELLQLAEKRVLEISEERPKEGGFVDVNALLKQTIEKIDFLFNSEDDLTGIPTGIQELDEKTSGWQSGELVI LAARPSMGKTALALNFVEAAVFSREQQPCLVFSLEMPADALVMRMLSSVGRIDQGRLRNGSLIEEDWPKLEMAARKLKDK KLFIDDTAGLSPNEVRARVKRIVREHGNPSMIMVDYLQLMQVPGSTEGRTQEISEISRSMKALAKEYECPVVCLSQLNRG VEQRPNKRPMNSDLRESGAIEQDADVILFIYRDEYYNEDSQEKGVAELIIGKQRNGEIGTCRAAFVGKFTRFDNLAPDYY PPGGGGGD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 6e-95 | 51 |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 9e-105 | 51 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 7e-96 | 47 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 2e-96 | 47 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 8e-81 | 46 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 5e-91 | 46 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 2e-86 | 46 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 2e-86 | 46 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 2e-72 | 41 |
