Gene Information

Name : Sde_1060 (Sde_1060)
Accession : YP_526534.1
Strain : Saccharophagus degradans 2-40
Genome accession: NC_007912
Putative virulence/resistance : Unknown
Product : primary replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 1359158 - 1360624 bp
Length : 1467 bp
Strand : +
Note : -

DNA sequence :
ATGAGTGAATTTGAGCCTACCGATTATGCGGGTTACGACGATATCCCCGCAGATATGGAGCACCACTTAGATGTGCCGGA
TACCGGTGTTGAAAGTGAATCGGCTTCATCTCACTCAATTCTGCCCCATTCTGTAGAGGCAGAGCAGTCTGTATTAGGCG
GCTTGCTGCAAGAAGCCTCTAATTTTGATTCGGTAAGTGAAATACTTTCCGAGAAAGACTTTTTTAAAGCCCCGCATAGA
AAAATATTCCGCGCTATGGCGCAATTGATGGAGCGCGAACAGCCCATCGATGTTATTACCGTATCTGAATTTTTAAGCGC
CGAAGATGAATTGGTTGGTGCCGGTGGCTTAGATTACCTCTCCGACTTAGCAACAGAAGTGCCGAGCAGTGCAAACGTTG
TGGCCTACGCCAAAATCGTGCGCGAGCGCGCCACCCTCAGGCAGTTGATTTCCGCCGCTACTGAAATAAGTAAAGCGAGC
TATAACCCCGGTGGTTTAGCGTCAGATGAGCTACTGCAGCTAGCGGAAAAGCGCGTATTAGAAATATCCGAAGAGCGTCC
AAAAGAGGGCGGCTTTGTTGATGTTAACGCGCTGCTAAAGCAAACCATCGAGAAGATCGACTTCTTATTTAATTCCGAAG
ACGATCTCACCGGTATTCCTACCGGTATTCAAGAATTAGACGAAAAAACCTCTGGCTGGCAGTCGGGTGAGCTTGTTATT
TTGGCGGCCCGTCCATCTATGGGTAAAACAGCCTTGGCGCTTAATTTTGTTGAGGCGGCGGTGTTCTCCCGCGAGCAACA
GCCATGCCTAGTATTCAGCCTAGAGATGCCCGCGGATGCGCTGGTTATGCGGATGCTATCTTCCGTAGGGCGCATCGATC
AAGGGCGCTTGCGCAACGGCTCGCTAATCGAAGAAGATTGGCCCAAGCTTGAAATGGCGGCGCGCAAGCTAAAAGATAAA
AAGTTATTTATCGACGATACCGCGGGCCTGTCGCCAAACGAAGTGCGCGCACGGGTGAAGCGTATTGTGCGCGAGCACGG
CAACCCCTCTATGATCATGGTGGATTACCTTCAGCTTATGCAGGTGCCTGGGTCCACCGAAGGGCGAACGCAAGAAATTT
CCGAAATATCGCGCTCTATGAAGGCGCTGGCGAAAGAATACGAATGCCCTGTGGTGTGCTTATCCCAGCTTAACCGTGGT
GTGGAGCAGCGCCCCAATAAGCGCCCAATGAACTCCGACTTGCGGGAATCCGGTGCGATCGAGCAGGATGCGGACGTTAT
TCTGTTTATATATCGCGATGAGTACTACAACGAAGACAGTCAAGAAAAAGGCGTAGCCGAGCTGATTATCGGCAAGCAGC
GTAATGGTGAGATTGGTACCTGTCGAGCGGCGTTTGTGGGTAAATTCACACGCTTTGACAACCTAGCTCCAGATTATTAT
CCGCCTGGCGGCGGTGGTGGCGACTAG

Protein sequence :
MSEFEPTDYAGYDDIPADMEHHLDVPDTGVESESASSHSILPHSVEAEQSVLGGLLQEASNFDSVSEILSEKDFFKAPHR
KIFRAMAQLMEREQPIDVITVSEFLSAEDELVGAGGLDYLSDLATEVPSSANVVAYAKIVRERATLRQLISAATEISKAS
YNPGGLASDELLQLAEKRVLEISEERPKEGGFVDVNALLKQTIEKIDFLFNSEDDLTGIPTGIQELDEKTSGWQSGELVI
LAARPSMGKTALALNFVEAAVFSREQQPCLVFSLEMPADALVMRMLSSVGRIDQGRLRNGSLIEEDWPKLEMAARKLKDK
KLFIDDTAGLSPNEVRARVKRIVREHGNPSMIMVDYLQLMQVPGSTEGRTQEISEISRSMKALAKEYECPVVCLSQLNRG
VEQRPNKRPMNSDLRESGAIEQDADVILFIYRDEYYNEDSQEKGVAELIIGKQRNGEIGTCRAAFVGKFTRFDNLAPDYY
PPGGGGGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 6e-95 51
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 9e-105 51
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 2e-96 47
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 7e-96 47
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 8e-81 46
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 5e-91 46
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 2e-86 46
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 2e-86 46
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 2e-72 41