Gene Information

Name : Rfer_0667 (Rfer_0667)
Accession : YP_521949.1
Strain : Rhodoferax ferrireducens T118
Genome accession: NC_007908
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 692624 - 693904 bp
Length : 1281 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTGTGGTTGCTGTGATCGGTTTGGGTTATGTGGGTTTGCCTTTGGTGGTGGAGTTTGGCAAACACTTTCGCACGAT
CGGGTTTGACATTTCAATGTCCAAAGTTGAGTCCTGTCTCAAGGGAGTGGATCCCTCGCGAGAATTGTCGGATGAGGAAA
TGCGAGCGTCGCCACAGGCCGTGTACACCGCTGATCCCACCCTGCTGGCCGAGGCAGACATCATCGTCGTGGCCGTGCCA
ACACCCGTAGACAACGCGCACATACCAGATTTTCGCCCGCTCATCGGTGCCAGCGCCAGTGCCGGTCGCAACATGAAAAA
AGGCGCTATCGTCGTTTACGAGTCAACGGTCTACCCAGGCGCCACTGAAGAAGTATGTATTCCCGTGCTGGAGCGCGAGT
CTGGCTTGAAGTGGAAACAGGATTTTTTTGTGGGCTATTCTCCTGAGCGAATCAACCCCGGTGACAAAGAACACACCCTT
ACCAAAATCCTCAAAGTTGTCTCGGGCGACAGTCCCGACACGCTGGATCAGGTGGCCAGGCTGTATGAGACCATCATCCT
GCCCGGCGTTCATCGCGCATCCAGTATCAAGGCCGCAGAAGCTGCCAAAGTGATCGAGAACACCCAGCGGGATCTGAATA
TCTCCCTGATGAACGAGCTGTCCATCATCTTCGACAAGCTCGGTATCGACACCACTGAGGTGCTCGCAGCCGCCGCTACC
AAATGGAATTTTCTTAACTTCAAGCCGGGCCTGGTGGGTGGCCACTGCATTGGCGTGGATCCGTATTACCTGACCCACAA
GGCCGAGATGTTGGGCTATACCCCACAAGTTATTTTGGCTGGCCGGCGTATCAATGACGGCATGGGCAAGTTCATTGCCG
AACAGACCATCAAGCAAATGATTGCCGCCGGCAGTTACGTCAAGGGCGCCAAGGTCAACGTCCTCGGGCTTACCTTCAAG
GAAAACTGCGGTGACCTGCGCAACTCCAAAGTGATCGACATCATCAATGAGCTCAAGTCATACGGCGTCGAGGTGTTTGT
GACCGACCCACGGGCCAAGTCGGATGAAGCCATGCATGAATACGGTGTGTCGTTGCTACCTTGGGCCGACCTGCCCCGGG
CCGACGCCATTGTCGCCGCTGTTGCGCACCGTGAATTTGCAGAGTTGACGGCGGAGGATTTCGGCAAAAAACTCATCCGG
GGTGGCGCATTTATTGACGTCAAAGCCGCTTTCGACAGCGGCGCTATCGAAGGCGCAGGTTACAAACTCTGGCGCTTGTA
A

Protein sequence : 
MSVVAVIGLGYVGLPLVVEFGKHFRTIGFDISMSKVESCLKGVDPSRELSDEEMRASPQAVYTADPTLLAEADIIVVAVP
TPVDNAHIPDFRPLIGASASAGRNMKKGAIVVYESTVYPGATEEVCIPVLERESGLKWKQDFFVGYSPERINPGDKEHTL
TKILKVVSGDSPDTLDQVARLYETIILPGVHRASSIKAAEAAKVIENTQRDLNISLMNELSIIFDKLGIDTTEVLAAAAT
KWNFLNFKPGLVGGHCIGVDPYYLTHKAEMLGYTPQVILAGRRINDGMGKFIAEQTIKQMIAAGSYVKGAKVNVLGLTFK
ENCGDLRNSKVIDIINELKSYGVEVFVTDPRAKSDEAMHEYGVSLLPWADLPRADAIVAAVAHREFAELTAEDFGKKLIR
GGAFIDVKAAFDSGAIEGAGYKLWRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-109 55
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-99 53
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-99 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rfer_0667 YP_521949.1 UDP-glucose/GDP-mannose dehydrogenase VFG0431 Protein 6e-100 53