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Name : Rfer_0553 (Rfer_0553) Accession : YP_521835.1 Strain : Rhodoferax ferrireducens T118 Genome accession: NC_007908 Putative virulence/resistance : Virulence Product : ATPase FliI/YscN Function : - COG functional category : N : Cell motility COG ID : COG1157 EC number : 3.6.3.15 Position : 577783 - 579198 bp Length : 1416 bp Strand : + Note : - DNA sequence : ATGAACAGTGACGCCTCGGTCAAGTGGCAGCTCTTTATGGACAGTGCCCGCAAGCGCGTCAGCACCGGCAGCACGCTGGC GCTGCGCGGCACCCTGACGCGGCTGACCGGCCTGGTGCTTGAAGCAAGCGGCATTCGCGTGCCGGTGGGTTCGCAGTGCC TGGTGACGATGAAGGCGCAAACACCGGTGCTGGCCGAGGTGGTCGGGTTTTCAAACGACCGTGCTTTCCTGATGCCAGCA GGCGATGTGCATGGCTTGTCCAGCGGCGCCAGTGTGGAACCGGCGGCGGCGTATGTGGCGGTGCCGCGTTTGGGCGAGCG CCGCCAGACCGAGCGCATTTCGGGTTACGCCACATTGCGCCTGCCCCTGGGGGACGGCTTGTTGGGGCGCGTCGTGGACG CGCAGGGGGCGCCAATGGATCGCCGCGGTCCGATTGAGGACGTCACGGCGGTGCCGCTGGATCGGCAACCCATCAATGCG ATGGACCGGGCGCCGGTGCGTGAAACGCTTGACACCGGGGTGCGCGCCATTAATGCGCTCCTGACGATTGGCCGGGGGCA GCGTATTGGGCTGTTTGCCGGCTCCGGCGTGGGCAAGAGCGTCCTGCTGGGCATGATGGCACGCTACACAAAGGCAGATG TGATTGTGGTGGGCCTGATCGGAGAGCGCGGGCGTGAAGTCAAGGAGTTTATTGAAGATATTCTGGGCGACGATGGACGC GCCCGCTCGGTGGTGGTGGCGGCCCCAGGCGACGCGCCGCCGCTCTTACGCATGCAGGGGGCAGCCTACGCCACGGCCAT TGCGGAGAGTTTCCGGGACAAGGGCAAGCACGTGTTGTTGCTGATGGATTCGCTCACACGCTACGCCATGGCGCAGCGTG AAATTGCGCTGGCGATCGGCGAACCGCCCGCGACCAAGGGTTATCCGCCGTCCTGTTTTGCCAAATTGCCCCAGCTGGTG GAGCGCAGCGGCAATGGCTTGCATGGGGTGGGCTCGATCACCGCTTTTTATACCGTGTTGTCTGAGGGTGACGACCAGCA GGATCCGATTGCCGATGCGGCGCGGGCGATTCTGGACGGGCACATTGTGCTGTCGCGTGCGCTGGCGGAGTCGGGGCATT TCCCCGCCATTGACATCGAGCAGTCGGCATCGCGCGTGATGCACAACGTGGTGCCACAACAGCATTTTGAGATGGCGCGG CGATTTCGGGCGATTAACTCGCGCTATGAAAAAGGCCGCGATCTGGTGCAGATTGGCGCCTACGTCGGCGGCTCCGATCC GGCGCTGGACGAGGCGATCCAATTGCACGATGACATGGCCAGGTTTTTACAGCAGGATATGTTGGAGGCGTCCACCTTGG ATGCCAGCGTGTGCGCCATGGCGAAGGCCTTGGATCATGAAGAGGCCGTGGCATGA Protein sequence : MNSDASVKWQLFMDSARKRVSTGSTLALRGTLTRLTGLVLEASGIRVPVGSQCLVTMKAQTPVLAEVVGFSNDRAFLMPA GDVHGLSSGASVEPAAAYVAVPRLGERRQTERISGYATLRLPLGDGLLGRVVDAQGAPMDRRGPIEDVTAVPLDRQPINA MDRAPVRETLDTGVRAINALLTIGRGQRIGLFAGSGVGKSVLLGMMARYTKADVIVVGLIGERGREVKEFIEDILGDDGR ARSVVVAAPGDAPPLLRMQGAAYATAIAESFRDKGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSCFAKLPQLV ERSGNGLHGVGSITAFYTVLSEGDDQQDPIADAARAILDGHIVLSRALAESGHFPAIDIEQSASRVMHNVVPQQHFEMAR RFRAINSRYEKGRDLVQIGAYVGGSDPALDEAIQLHDDMARFLQQDMLEASTLDASVCAMAKALDHEEAVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpB6 | AAB08461.1 | HrpB6 | Virulence | Hrp PAI | Protein | 7e-72 | 49 |
| hrcN | YP_362163.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 9e-72 | 49 |
| hrpB6 | BAB07852.1 | HrpB6 | Virulence | Hrp PAI | Protein | 2e-72 | 49 |
| hrcN | YP_198730.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 2e-72 | 49 |
| hrpB6 | AAF61281.1 | HrpB6 | Virulence | Hrp PAI | Protein | 2e-72 | 49 |
| hrcN | NP_640767.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 2e-72 | 49 |
| hrcN | AAP34339.1 | HrcN | Virulence | Hrp PAI | Protein | 1e-72 | 49 |
| XC_3006 | YP_244074.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 2e-68 | 47 |
| hrcN | NP_636610.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 2e-68 | 47 |
| lscN | AAO18044.1 | LscN | Virulence | TTSS locus | Protein | 6e-70 | 46 |
| ssaN | CAA70537.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 1e-63 | 46 |
| ssaN | NP_460380.1 | type III secretion system ATPase | Virulence | SPI-2 | Protein | 2e-63 | 46 |
| ssaN | YP_216423.1 | type III secretion system ATPase | Virulence | SPI-2 | Protein | 3e-63 | 46 |
| hrcN | AAT96141.1 | HrcN | Virulence | T-PAI | Protein | 1e-65 | 44 |
| hrcN | AAT96195.1 | HrcN | Virulence | T-PAI | Protein | 7e-66 | 44 |
| hrcN | AAG33879.1 | HrcN | Virulence | Hrp PAI | Protein | 8e-64 | 43 |
| hrcN | NP_791227.1 | type III secretion cytoplasmic ATPase HrcN | Virulence | Hrp PAI | Protein | 8e-64 | 43 |
| hrcN | AAR25633.1 | type III secretion cytoplasmic ATPase HrcN | Not tested | Not named | Protein | 2e-60 | 42 |
| hrpJ4 | AAA81942.1 | HrpJ4 | Virulence | Hrp PAI | Protein | 7e-62 | 42 |
| hrcN | ABQ88354.1 | HrcN | Virulence | Hrp PAI | Protein | 7e-62 | 42 |
| hrcN | AAB06001.1 | HrcN | Virulence | Hrp PAI | Protein | 1e-66 | 42 |
| hrcN | AAT96339.1 | HrcN | Virulence | S-PAI | Protein | 8e-64 | 42 |
| hrcN | ABA47275.1 | HrcN | Virulence | S-PAI | Protein | 1e-66 | 42 |
| hrcN | AAT96258.1 | HrcN | Virulence | S-PAI | Protein | 8e-63 | 41 |
| hrcN | AAT96299.1 | HrcN | Virulence | S-PAI | Protein | 3e-63 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rfer_0553 | YP_521835.1 | ATPase FliI/YscN | VFG2331 | Protein | 5e-115 | 61 |
| Rfer_0553 | YP_521835.1 | ATPase FliI/YscN | VFG2499 | Protein | 2e-115 | 59 |
| Rfer_0553 | YP_521835.1 | ATPase FliI/YscN | VFG1254 | Protein | 4e-107 | 58 |
| Rfer_0553 | YP_521835.1 | ATPase FliI/YscN | VFG0048 | Protein | 4e-72 | 46 |
| Rfer_0553 | YP_521835.1 | ATPase FliI/YscN | VFG2144 | Protein | 2e-78 | 46 |
| Rfer_0553 | YP_521835.1 | ATPase FliI/YscN | VFG0515 | Protein | 7e-64 | 46 |
| Rfer_0553 | YP_521835.1 | ATPase FliI/YscN | VFG0192 | Protein | 2e-72 | 45 |
| Rfer_0553 | YP_521835.1 | ATPase FliI/YscN | VFG0390 | Protein | 8e-69 | 45 |
| Rfer_0553 | YP_521835.1 | ATPase FliI/YscN | VFG1008 | Protein | 4e-58 | 41 |
| Rfer_0553 | YP_521835.1 | ATPase FliI/YscN | VFG1778 | Protein | 1e-58 | 41 |
