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Name : Rfer_0543 (Rfer_0543) Accession : YP_521825.1 Strain : Rhodoferax ferrireducens T118 Genome accession: NC_007908 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 566410 - 567798 bp Length : 1389 bp Strand : + Note : - DNA sequence : ATGCGCTACCCGCTGCCCTATGCCTTTGCCCGCACCCACCAGCTCCTGCTCGAAGACGAGGCGGGGGACTTGACGCTGTG CGTGCACCCGGACTCGGGGGGCAGTGCGGTGAGCGAAGTGATGCGCAAGTTCCCGGTGCGGCATCTGCAGTCGCTCGGTG CGCAGGCGCTGATTCAGCGCATCAGCGCCGCCTATGCCCAGGGCGAATCGAGTGCCGCGGCGGTGGTCAGCGAGGTCGAG AGCGACGCTGACCTTACGCGCATGATGCAGGACCTGCCCGCGATTGAAGACTTGCTGGAGACCTCGGACGATGCGCCCAT CATTCGCATGCTCAATGCGCTCTTGACACAGGCCGCGCGCGACGGCGCCAGTGACATTCATATCGAGCCCTATGAGCGCC ATTCGAGCGTGCGCTTTCGGGTCGATGGCACGCTGCGCGAGGTGGTGCAACCCAACCGGGCGCTGCACGCGGCATTGATC TCGCGCCTGAAGATCATGGCCGAGCTCGATATTGCCGAACGCCGCCTGCCGCAAGACGGCCGTATCTCGCTGCGTATTGG CACGCGCGCTGTTGATGTGCGTGTCAGCACCCTGCCCAGCGCCCATGGCGAGCGCGCCGTGTTGCGACTGCTCGACAAGT CGGAGGGGCGCCTCAGTCTGGAAGCGCTCGGCATGCAGGGCGAGGTGCTCAAGCGCTTTGAGCATCTGGTGACGCAACCG CACGGCATCGTGCTGGTCACCGGTCCCACCGGCTCGGGCAAGACCACCACGCTGTACGCCGCCTTGAGCCGGTTAGACGC CAGCCGCAGCAACATCATGACGGTGGAAGACCCGATTGAGTACGAGTTGGCCGGTGTCGGCCAGACCCAGGTCAACGCCA AGATTGAACTCACCTTTGCCAAGGCTTTGCGTGCCATTTTGCGGCAAGACCCGGACATCATCATGATCGGTGAAATCCGC GATTTCGAGACGGCCCAGATTGCAATTCAAGCCTCGCTCACCGGTCATTTGGTGCTCGCCACGCTGCACACCAATGACGC CACCAGCGCCGTCACCCGTTTGACCGACATGGGGGTCGAGCCGTTCTTGCTCAGCTCCAGCTTGCTGGGCGTGTTGGCCC AGCGCCTGCTGCGCAAGCTGTGCCTGACCTGCCATGGTGCCGGCTGCAGCGCCTGTGGCCAAACCGGCTACGCCGGGCGC TCGGGCGTGTTCGAACTGCTGGTCACCGACGATGCCATTCGCGCCCAGATCCACGGCCGCGCGGCGGAAGCCGACATCCG CGCCGCTGCCCTGGCCAGTGGCATGACGCTGATGCGTGATGACGGCGAACGGCTGGTTCGCCTGGGGCTGACCTCGCGCG AAGAGTTGGTGCGCGTGACGCGCGACTAG Protein sequence : MRYPLPYAFARTHQLLLEDEAGDLTLCVHPDSGGSAVSEVMRKFPVRHLQSLGAQALIQRISAAYAQGESSAAAVVSEVE SDADLTRMMQDLPAIEDLLETSDDAPIIRMLNALLTQAARDGASDIHIEPYERHSSVRFRVDGTLREVVQPNRALHAALI SRLKIMAELDIAERRLPQDGRISLRIGTRAVDVRVSTLPSAHGERAVLRLLDKSEGRLSLEALGMQGEVLKRFEHLVTQP HGIVLVTGPTGSGKTTTLYAALSRLDASRSNIMTVEDPIEYELAGVGQTQVNAKIELTFAKALRAILRQDPDIIMIGEIR DFETAQIAIQASLTGHLVLATLHTNDATSAVTRLTDMGVEPFLLSSSLLGVLAQRLLRKLCLTCHGAGCSACGQTGYAGR SGVFELLVTDDAIRAQIHGRAAEADIRAAALASGMTLMRDDGERLVRLGLTSREELVRVTRD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 7e-101 | 53 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-101 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rfer_0543 | YP_521825.1 | type II secretion system protein E | VFG0182 | Protein | 1e-109 | 54 |
| Rfer_0543 | YP_521825.1 | type II secretion system protein E | VFG1876 | Protein | 8e-105 | 52 |
| Rfer_0543 | YP_521825.1 | type II secretion system protein E | VFG2048 | Protein | 5e-100 | 52 |
| Rfer_0543 | YP_521825.1 | type II secretion system protein E | VFG2426 | Protein | 2e-66 | 46 |
| Rfer_0543 | YP_521825.1 | type II secretion system protein E | VFG0233 | Protein | 7e-74 | 45 |
