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Name : Rfer_4010 (Rfer_4010) Accession : YP_525239.1 Strain : Rhodoferax ferrireducens T118 Genome accession: NC_007908 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 4473039 - 4476242 bp Length : 3204 bp Strand : + Note : - DNA sequence : ATGCTCACCGAATCCGCCATCGAAACCTTTGCCATCAAGCTGTTTGAACGGCTAGGTTACGTCTACCTGCATGGCCCTGA CATCGCCCCTGACAGTGATGGCCCAGAGCGCAGCAGCTACGCCGAGGTGCTGTTGCCCGGTCGGCTAGCCCAGGCCGCCG GGCGCATCAACCACAAGCTGCCCCGGGATGTGGTTGAAATGGCGCTCAAGGAGGTGCAACGGGCCCACTCGCCAGACTTG CTGGCCAGCAATGAGGCTTTCCATCGCCTGTTGACGGAAGGGGTGCCGGTCAGCATGCAAAAGGATGGTGACACACGCGG CGAACGGGTGTGGCTGATTGACTTCGCCCGGCCTGAGAACAACGAGTTCGTGGTGGCAAACCAATTCACCGTCATCGAAA ACCATCAAAAGAAACGGCCCGACCTGGTGCTGTTTGTCAATGGCATTCCGCTGGTGGTGATCGAACTCAAGAACGCAGCC GATGAAAACGCCACGCTTAAGTCGGCGTATCAGCAGATTGAGACCTACAAACAAGCCATACCGAGTCTGTTCACTGCCAA CGCTTTGGTCGTCATCTCTGACGGCCTGGAGGCCAAGGCTGGCTCCATCTCAGCAAGTTTGTCGCGCTTTATGGCATGGA AGAGCGCTGATGGCAAAGCAGAAGCGTCTCATCTGGTCAGCCAGTTGGAAGCGCTGATCCTCGGCATGTTGAACCAGGGA ACGTTGCTGGACTTGGTGCGCCACTTCATCGTTTTCGAGAAGGGCAGCAAGGAAGATCCGAACACAGGTCAGATCACGAT CAGCACCATCAAGAAGCTGGCGGCCTATCACCAGTATTACGCGGTGAACGCGGCGGTAGCCTCCACCTTGCGGGCGGCGG ACATGGGCGGGCCGCTGTCCGTGCGCGAGAATCCGGCCAGTTATGGCCTGCCCGGTATTGCAGATCAGCCTAAGAGTGAC ATGAAGGCGGGTGTGGTGTGGCACACCCAGGGGTCGGGCAAGTCGCTCTCCATGGTTTTCTATACCGGCAAGATTGTTCT AACGCTGGACAACCCGACGGTGCTGGTGATCACCGACCGCAATGATCTGGACGACCAGCTTTTTAATACCTTTGCCGCTT CCAAACAGTTGTTACGCCAGGAGCCAGTGCAGGCGAAGGATCGCGAGCACTTAAAGGCACTGCTGAAGGTGGCAGCGGGC GGCGTTGTTTTCTCAACCATTCAGAAGTTCCAGCCCGATGAGGGCAATGTTTACGACCAGCTCTCCAATCGTCCCAACAT CGTGGTGATCGTCGACGAAGCCCACCGCACCCAGTACGGCTTTGCCGCCAAGACGGTAGACGAGAAAAATGCAGATGGCA TGGTGATCGGCAAGAAGGTGGTCTATGGCTTTGCCAAGTATCTGCGCGATGCTTTGCCCCGCGCCACCTATCTGGGTTTC ACCGGTACACCCATTGAGAAAACTGATGTGAACACCCCGGCGGTGTTTGGCAACTATGTGGACATCTATGACATTGCCCA AGCAGTGGAGGATGGTGCCACGGTGCGTATTTATTACGAGAGCCGCCTGGCCAAAGTAAGTCTGAGCGAGGAAGGCAAGA AACTGATTGCCGAATTGGACGAAGAGCTGGAGCAAGACGAGCTGACCGAGACACAAAAACCCAAAGCCAAGTGGACCAAG ATGGAGGCGCTGATTGGCAGTGAGCAGCGAGTTAAGAACATTGCCCGCGACATCGTCGGTCACTTTGAGGCGAGACAGGA GGTATTCGCTGGCAAGGGAATGGTGGTGAGCATGTCGCGGCGCATTGCTGCCGATCTGTATGACGAAATCATCAAACTGC GGCCCGACTGGCACGCCGACGAACTGAGCAAAGGCGTTATCAAGGTGGTGATGACTGCTGCATCAAGCGATGGGCCGAAG CTCGCCAAGCACCACACTACCAAGGAGCAGCGGAAGCTGCTGGCCGAGCGCATGAAGGCTGAAGATGATCCGCTCAAGTT GGTGATCGTGCGCGACATGTGGCTGACCGGCTTCGATGCGCCGAGCATGCACACCCTCTACATCGACAAGCCCATGAAGG GGCACAACCTGATGCAGGCTATTGCGCGGGTGAACCGTGTGTACAAAGACAAGCCTGGCGGCTTGGTGGTCGATTACCTG GGAATCGCGGCGGACCTCAAAGAGGCGCTTTCGTTCTATTCCGATGCTGGCGGCAAGGGTGACCCAACCCTGTTGCAGGA GCAGGCCGTGGGCCTGATGCTGGAGAAACTTGAGGTGATCTCGGCCCTGTATCACGGCTTTGCCTATGAACACTATTTCG GAGCGAATACCGCCCAGAAGCTGTCGCTGATTCTCGCGGCGGAAGAGCATATCCTCGGCTTGGATGACGGCCGCAAGCGT TATATCAACGAGGTCACGGCGCTTTCGCAAGCCTTCGCCATTGCCATACCGCATGAACAAGCGATGGACGTGAAAGACGA GGTGGGCTTCTTCCAGGCCGTGAAGGCGCGGCTGGTGAAGTACGACAGTGTCGAAGGCGAGCGCAGCAACGAAGAAATTG AAACCACCATTCGCCAGGTGATTGACCAAGCGTTGGTGTCGGAAAAAGTGATTGATGTGTTTGACGCGGCGGGCATCAAA AAAACAGATATCTCCATACTGTCGGATGAATTCTTGGCCGAACTGAAAGGCTACGAGCATAAAAACGTGGCCTTGGAGGT GCTCAAGAAACTCCTCAATGACGAATTGAAAATCCGCGCCAAGCGCAACCTGGTGCAAAGCCGGTCACTGATGGAGATGT TAGAGGCCTCCATCAAGAAATACCACAACAAGATTCTGACTGCGGCCGAGGTGATGGACGAGCTGATCAAGGTCAGCAAA GAGATCGTCGCCGCCGATGATGAAGCCAGACACATGGGGCTTTCCGACTTTGAATATGCTTTTTACACTGCAGTGGCCAA TAACGACAGTGCCCGTGAACTGATGCAACAAGACAAGTTACGCGAACTAGCCGTGGTGTTAACCCAGCGCGTGCGCGAAA ACGCATCCATAGACTGGACTATCAAAGAGAACGTGAGAGCTAAGCTCAAGGTGATTGTGAAACGCACTCTGCGGCAATTT GGTTATCCACCAAACATGGAGTTGCTCGCGACTGAAACAGTGCTGAAGCAGGCGGAGATGATTGCGAACGAGCTTACGCA GTAG Protein sequence : MLTESAIETFAIKLFERLGYVYLHGPDIAPDSDGPERSSYAEVLLPGRLAQAAGRINHKLPRDVVEMALKEVQRAHSPDL LASNEAFHRLLTEGVPVSMQKDGDTRGERVWLIDFARPENNEFVVANQFTVIENHQKKRPDLVLFVNGIPLVVIELKNAA DENATLKSAYQQIETYKQAIPSLFTANALVVISDGLEAKAGSISASLSRFMAWKSADGKAEASHLVSQLEALILGMLNQG TLLDLVRHFIVFEKGSKEDPNTGQITISTIKKLAAYHQYYAVNAAVASTLRAADMGGPLSVRENPASYGLPGIADQPKSD MKAGVVWHTQGSGKSLSMVFYTGKIVLTLDNPTVLVITDRNDLDDQLFNTFAASKQLLRQEPVQAKDREHLKALLKVAAG GVVFSTIQKFQPDEGNVYDQLSNRPNIVVIVDEAHRTQYGFAAKTVDEKNADGMVIGKKVVYGFAKYLRDALPRATYLGF TGTPIEKTDVNTPAVFGNYVDIYDIAQAVEDGATVRIYYESRLAKVSLSEEGKKLIAELDEELEQDELTETQKPKAKWTK MEALIGSEQRVKNIARDIVGHFEARQEVFAGKGMVVSMSRRIAADLYDEIIKLRPDWHADELSKGVIKVVMTAASSDGPK LAKHHTTKEQRKLLAERMKAEDDPLKLVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKDKPGGLVVDYL GIAADLKEALSFYSDAGGKGDPTLLQEQAVGLMLEKLEVISALYHGFAYEHYFGANTAQKLSLILAAEEHILGLDDGRKR YINEVTALSQAFAIAIPHEQAMDVKDEVGFFQAVKARLVKYDSVEGERSNEEIETTIRQVIDQALVSEKVIDVFDAAGIK KTDISILSDEFLAELKGYEHKNVALEVLKKLLNDELKIRAKRNLVQSRSLMEMLEASIKKYHNKILTAAEVMDELIKVSK EIVAADDEARHMGLSDFEYAFYTAVANNDSARELMQQDKLRELAVVLTQRVRENASIDWTIKENVRAKLKVIVKRTLRQF GYPPNMELLATETVLKQAEMIANELTQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 47 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 46 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 46 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 45 |
