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Name : Rfer_4006 (Rfer_4006) Accession : YP_525235.1 Strain : Rhodoferax ferrireducens T118 Genome accession: NC_007908 Putative virulence/resistance : Unknown Product : N-6 DNA methylase Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : - Position : 4468511 - 4470055 bp Length : 1545 bp Strand : + Note : - DNA sequence : ATGGCCCGTGCACCCACAGCAAAACCCGACAAAGAAGAACCACTGGAAAAGCAGCTCTGGAAAGCCGCCGACAAGCTGCG CAAGAACATTGATGCGGCCGAATACAAGCATGTGGTGCTTGGCCTCATTTTCCTTAAGTACATCTCCGACTCCTTCGAGG AACTGTTCACAAAGCTGCAAGGCGGCGCAGGCGACTACGCCGGGGCCGACCCGGAAGACAAAGACGAATACAAGGCCGAA AACGTCTTCTTTGTGCCGCCGCAAGCGCGCTGGTCATTTTTGTTGGGCAAGGCCAAGCAACCCGACGTTGGCAGCCACGT TGACGCGGCCATGGACGCCATCGAAAAGGAAAACCCTTCACTCAAGGGCGTTCTGCCCAAGGTCTTTGCCCGGCAAAATC TTGACCCCGCCAGCCTGGGCGGGCTGATCGACTTGGTGGGCAACATTGCATTGGGCGACGCCAAGGCCCGCAGCGCCGAT GTGCTGGGCCACGTCTTTGAGTACTTCTTGGGCGAATTTGCGCTGGCCGAGGGCAAGCAGGGCGGGCAGTTTTATACGCC GCGCTCCATCGTGGAACTGCTGGTGGTCATGCTGGAACCCTACAAGGGCCGGGTGTTTGACCCCTGTTGCGGGTCCGGCG GCATGTTCGTGCAATCGGAAAAATTCGTCACAGAACACCAGGGCCGCATCAACGACATCTCCATCTTCGGGCAGGAAAGC AACCAGACAACTTGGCGCTTAGCCAAAATGAACCTGGCCATTCGTGGCATTGACGCATCCCAAGTGAAATGGAACAACGA AGGCTCCTTCCTCAACGATGCGCACAAGGATGTAAAGGCCGACTTCATCATTGCCAACCCGCCCTTCAACGTGAGCGACT GGAATGGCGAGCTGCTGCGCAAGGACGGTCGCTGGCAATACGGCGTGCCGCCTACCGGCAATGCCAACTTTGCCTGGCTG CAGCATTTCAACCACCACCTGGCCCCCAACGGCCGCGCCGGTGTGGTGCTGGCCAAGGGCGCACTCACCAGCAAGAGCAG CGGTGAGGGCGACATCCGCAAGGCGATGGTGGTGGACGGCAACCTGATCGACTGCATCGTCAACCTGCCTGCCAAGCTGT TCCTGAACACGCAAATTCCGGCGGGCCTATGGTTCATGAACCGCGCCCGCAACAACGGCCACCCGCGCAAGGGCGAGATT CTGTTCATTGATGCGCGCAATCTCGGACACCTCATTAACCGCCGCACGCGCGAGCTGAGCGATGAGGACATCCAGAAGGT TGCCAGCGTTTACCACGCCTGGCGCACCGGCGAGAGCGAGTACGCAGACGAAAAGGGCTTCTGCGCCTCGGTGCCGCTGG CGCGGGTGGCGGAACTGGACTATGTGCTGACGCCGGGGCGCTATGTGGGCCTGCCGGATGAAGAAGACGACTTCGACTTT GCGGAACGCTTTGCATCGTTGAAGGCCGAGTTGGAAGCCCAGCTTTTGGAGGAAGCCGAGCTGAACCAGGCCATTGCAGA AAACTTGGCGAAGGTAAAGGTATGA Protein sequence : MARAPTAKPDKEEPLEKQLWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFEELFTKLQGGAGDYAGADPEDKDEYKAE NVFFVPPQARWSFLLGKAKQPDVGSHVDAAMDAIEKENPSLKGVLPKVFARQNLDPASLGGLIDLVGNIALGDAKARSAD VLGHVFEYFLGEFALAEGKQGGQFYTPRSIVELLVVMLEPYKGRVFDPCCGSGGMFVQSEKFVTEHQGRINDISIFGQES NQTTWRLAKMNLAIRGIDASQVKWNNEGSFLNDAHKDVKADFIIANPPFNVSDWNGELLRKDGRWQYGVPPTGNANFAWL QHFNHHLAPNGRAGVVLAKGALTSKSSGEGDIRKAMVVDGNLIDCIVNLPAKLFLNTQIPAGLWFMNRARNNGHPRKGEI LFIDARNLGHLINRRTRELSDEDIQKVASVYHAWRTGESEYADEKGFCASVPLARVAELDYVLTPGRYVGLPDEEDDFDF AERFASLKAELEAQLLEEAELNQAIAENLAKVKV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 4e-133 | 59 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 1e-130 | 58 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 7e-132 | 58 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 8e-109 | 47 |
