Gene Information

Name : Rfer_3950 (Rfer_3950)
Accession : YP_525180.1
Strain : Rhodoferax ferrireducens T118
Genome accession: NC_007908
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4417001 - 4417675 bp
Length : 675 bp
Strand : +
Note : -

DNA sequence : 
ATGCGAATTCTGATTGCCGAAGATGATCAGGTACTGGCTGACGGCCTGCTGCGAACCCTGCGCAGTTCGGGCGCCGCCGT
CGACCATGTCGCCAGCGGAACGGAAGCCGACGCCGCGCTGATGACCAACACCGAATTCGACCTGTTGATCCTGGACCTGG
GCCTGCCCAAAATGCACGGACTCGAAGTCTTGAAGAAACTGCGCGCCCGCGGCTCCGCGCTGCCGGTGCTGATCCTGACC
GCCGCCGACGGCGTGGAAGAACGCGTCAAAGGGCTGGACCTGGGCGCCGATGACTACATGGCCAAGCCCTTTAGCCTACA
TGAACTTGAAGCACGGGTACGCGCGTTAAGCCGCCGCGGCATGGGCTCGGCCAGCAGCACCATCAAGCACGGCCCCTTGA
TTTATGACCAGTCCGGCCGTGTCGCCACCATCGACGGCGTGATGGTGGAGCTGTCGGCCCGTGAGCTCGGGCTGCTCGAA
GTGATGCTGCAGCGCGTCGGCCGTCTGGTGAGCAAGGACCAGCTGGTCGAGCGACTCTGTGAATGGGGCGAAGAGGTGAG
CAACAACGCCATTGAGGTCTACATCCATCGTCTGCGCAAAAAAATTGAAAAAGGCCCCATCCGCATTGCCACGGTGCGCG
GCCTGGGCTACTGCCTGGAAAAAATTCCCAAATAA

Protein sequence : 
MRILIAEDDQVLADGLLRTLRSSGAAVDHVASGTEADAALMTNTEFDLLILDLGLPKMHGLEVLKKLRARGSALPVLILT
AADGVEERVKGLDLGADDYMAKPFSLHELEARVRALSRRGMGSASSTIKHGPLIYDQSGRVATIDGVMVELSARELGLLE
VMLQRVGRLVSKDQLVERLCEWGEEVSNNAIEVYIHRLRKKIEKGPIRIATVRGLGYCLEKIPK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 7e-39 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rfer_3950 YP_525180.1 two component transcriptional regulator BAC0487 Protein 5e-36 45
Rfer_3950 YP_525180.1 two component transcriptional regulator BAC0083 Protein 6e-35 44
Rfer_3950 YP_525180.1 two component transcriptional regulator NC_002516.2.879194.p Protein 7e-33 43
Rfer_3950 YP_525180.1 two component transcriptional regulator BAC0638 Protein 1e-27 43
Rfer_3950 YP_525180.1 two component transcriptional regulator BAC0347 Protein 5e-32 41
Rfer_3950 YP_525180.1 two component transcriptional regulator BAC0197 Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rfer_3950 YP_525180.1 two component transcriptional regulator VFG0473 Protein 3e-38 42
Rfer_3950 YP_525180.1 two component transcriptional regulator VFG1389 Protein 3e-28 41