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Name : Rfer_3360 (Rfer_3360) Accession : YP_524600.1 Strain : Rhodoferax ferrireducens T118 Genome accession: NC_007908 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3730463 - 3732220 bp Length : 1758 bp Strand : + Note : - DNA sequence : ATGGCAGCCGTTTCCTCCCCGCAGGTCCGCCCACTGCCCGTGCCAGGTCGACCTGAGAAGCTGCGCCTGGGCGACGTGCT GGTTCAGCAGCGCCTGATTTCACAGGAACAGCTGCAAAAGACCCTGGACCTGCAACGCCAGACCGGCAAAAAAGTCGGCC GTCTGCTGATCGAGACCGGCATCATCACCGAAGAACTGCTGGCCAATGGTCTGGCGCGGCAGTTGCGCATTCCGTTCGTC AACCTCAAGACCTTCCCGTTTCGTGCCGACGTGGTCAAGCTGCTGCCTGAATCCGCGGCGCGGCGTTTTCGGGCCTTGGT GCTCGAAGACAAAGGCGACTCCCTGCTGCTGGCCTTGGGCGACCCGCTGGACTTGTTTGCCTTTGATGAGTTGACGCGCC TGCTCAAGCGCAACATCGCCATCGCGGCGGTGCCCGAAACCCAGCTGGCGCTGGCGTTTGACCGGCTCTATCGCCGCACC GAAGAGATCAGCGGCCTGGCCCGCGCGCTGGAAAAGGATCTGGGTGACGCCGTTGACTTTGGCGAGCTCACGGCAACGGC CGGCATCGAGGGCGCGCCGGTGGTGCGCCTGCTGCAGTCGCTGTTTGAAGACGCCATCCAGGTCGGCGCCTCCGACGTGC ACATTGAGCCGCAGGAAGCGGGTCTGCAAATCCGGGTGCGGGTCGATGGTGTGTTGCAAACCCAAACGCTGGCCGACAAA CGCATTGCCGGCGCCTTGGCCCAGCGCCTCAAGCTGATGGCGGGGCTTGATATTTCTGAAAAGCGTCTGCCGCAGGACGG CCGCTTCAGCGTCCGTCTGAAAGAGCAAACCATTGACGTGCGCCTGTCCACCCTGCCCACCAGCTACGGCGAATCGGTCG TCATGCGGCTGCTGATCCAGGGCGCGGGCATGCGCCGCCTGGACGGCATTGGCATGCCGGAGGCGATGCTCAAACGCTTT CGCGAAGTACTGGGCCGCAGCGCCGGTCTGGTGCTGGTCACCGGGCCCACCGGCTCCGGCAAAACCACCACCTTGTATGC CGCGCTGGCCGAAATCAACGCCGCCGAACTGAAAGTCATCACGGTCGAAGACCCGGTGGAATACCGCTTGCCCGGCATTA CCCAGGTGCAGGTCAACGACAAGATTGAGCTGAGCTTTGCGCGCGTGCTGCGCGCCACGCTGCGGCAAGATCCTGACGTG ATCCTGGTCGGTGAAATGCGGGACGCCGAGACGGCCGAGATCGGCTTGCGTGCCGCCATCACCGGGCATCTGGTGCTCTC GACCTTGCATACGCGCGACGCCATCAGCACGCCGTTTCGGCTGCTCGACATGGGCGTGCCACCGTTCATGGTAGCCACCT CCTTGCAGGCTGTGATTGCACAGCGGCTGGTGCGGCTCAACTGCAGTGAATGCGCTGAACCGCAGGAGCCCAGCGCCCAG GAGCTGGCCTGGCTCACCAGCATGGTCGAAGCGGGCGATGTGGTGCAAGCCCGGCGCGGTCGGGGTTGCAGCGCCTGCAA CGGTACCGGCTATGCGGGGCGCCAGGGCATCTACGAACTGTTGGAGATGGATGCCGGGCTCACCCAAGCCGCCTCGCACG CCGACCCGGCCACGTTCATGAAGCTGGCCCGCGAGCGCATGAAGGGCCACACGCTGGCGCATCATGTGCTGGCGCTGGTG CGCCAGGGGCGCACGTCCCTGGCCGAGGCCTTGCGCATTGGCTTCGATGTGGACGAAGACCTGGGCGCGCCGGACTAA Protein sequence : MAAVSSPQVRPLPVPGRPEKLRLGDVLVQQRLISQEQLQKTLDLQRQTGKKVGRLLIETGIITEELLANGLARQLRIPFV NLKTFPFRADVVKLLPESAARRFRALVLEDKGDSLLLALGDPLDLFAFDELTRLLKRNIAIAAVPETQLALAFDRLYRRT EEISGLARALEKDLGDAVDFGELTATAGIEGAPVVRLLQSLFEDAIQVGASDVHIEPQEAGLQIRVRVDGVLQTQTLADK RIAGALAQRLKLMAGLDISEKRLPQDGRFSVRLKEQTIDVRLSTLPTSYGESVVMRLLIQGAGMRRLDGIGMPEAMLKRF REVLGRSAGLVLVTGPTGSGKTTTLYAALAEINAAELKVITVEDPVEYRLPGITQVQVNDKIELSFARVLRATLRQDPDV ILVGEMRDAETAEIGLRAAITGHLVLSTLHTRDAISTPFRLLDMGVPPFMVATSLQAVIAQRLVRLNCSECAEPQEPSAQ ELAWLTSMVEAGDVVQARRGRGCSACNGTGYAGRQGIYELLEMDAGLTQAASHADPATFMKLARERMKGHTLAHHVLALV RQGRTSLAEALRIGFDVDEDLGAPD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-79 | 43 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-80 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rfer_3360 | YP_524600.1 | type II secretion system protein E | VFG0182 | Protein | 2e-79 | 44 |
| Rfer_3360 | YP_524600.1 | type II secretion system protein E | VFG1876 | Protein | 4e-84 | 43 |
| Rfer_3360 | YP_524600.1 | type II secretion system protein E | VFG2048 | Protein | 2e-80 | 43 |
