Gene Information

Name : Rfer_3345 (Rfer_3345)
Accession : YP_524585.1
Strain : Rhodoferax ferrireducens T118
Genome accession: NC_007908
Putative virulence/resistance : Virulence
Product : Fis family two component sigma-54 specific transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3713339 - 3714790 bp
Length : 1452 bp
Strand : +
Note : -

DNA sequence : 
ATGGCATCAAACACAACGCTGAGCAATGCCCGGATTCTGGTCGTCGATGACGAGCCCGACTTGCGCACGCTGTACGAGTT
GACACTGTTGCGCGAGGGTTACAGGGTGGAAACAGCCGGCAACCTGGCTGAGGCCTTGCAGCATCTGGGCGAGCGCCGCT
TTGACGTTGTGATTACCGACATGCGCCTGCCTGATGGTCTGGGCCTGGAACTGATCCAGCAACTGCGGGCGCAACAGCGC
CCGGAGCGATGCGTCGTCATCACAGCCTATGGCTCGGCAGAAAATGCCGTCGAGTCACTCAAGACGGGCGCGTTTGACTA
TCTGACCAAGCCGGTTGATCTCAAGCAGTTTCGATCCGTCATCGCCTCTGCCGTGCAAGACCCGGCTCCGCGGCCAACCG
CGGTCGGTCGCGCCGGCTCGCCACTCCCTGAGAGCAGCGATGCCGTGTTGCAGCGGCTGGTGGGGGAATCAGACAGCATG
AGGCGGGTCAAGGAGCGCATCGTCAAGGTGGCACGCAGCATGGCACCCGTGTTGGTGCATGGCGAGTCCGGCACCGGCAA
GGAACTGGTGGCGCGTGCCATTCATGCCAACAGTCACCGCACCGGCAGCGCCTGGGTCGCGGTGAACTGCAGCGCGATTC
CCGAGAGTCTGCTCGAAGCCGAATTTTTTGGCTCAAAGAAAGGCGCCTACACAGGATCAACCCAGGACCGCGTTGGCTTC
TTCCAGGCCGCAAGCGGTGGCACCTTGTTTCTCGATGAAATTGGCGACCTGCCCCTGTCGATGCAGTCAAAGTTGCTGCG
GGCCATCCAGGAGCGTTGTATCCGCCCGATCGGGTCGTCCCAGGAAGAACCGGTCGATGTCCGCATCATCAGCGCCACGC
ACAAAGACCTGAGTCTGGAAGTGTTGGCGGGCCGCTTTCGGCAGGATTTGTATTACCGTCTGGATGTCATTGAAATTGAG
ATTGCACCATTGCGCGAACGCCGGGAAGACTTGCCTGCGCTGTGCCAGACCTTGCTGCGCCGGATCGCGTTTGAGGCGGG
CATTCCGGTGCCGACACTCTCCAAAGCGGGACTTGAACAGCTCTCCCAAGACCCGCTGCCCGGCAACGTGCGCGAGCTGG
AGAATCTGTTGCAGCGCGCCGTCGCCTTGAGTGACGGCGATGAACTCCAGCTTGAACTCACCGCTCGGCAGCCGCTGACC
CAGGACGCCTCTTTTCTGGATAGCGGCCCGACACCGCTGGACGATGATCAAACCACCATCCCCAGCGACTTGCAAAGCCA
TCTCGACACTCAGGAACGCGACATCCTGATTCAGGCTCTGCGTGAAACCGGCTTCAATCGCACCGCCGCAGCGGCCCGGC
TCGGTTTGAGCCAGCGCCAAATGGGTTATCGCATTGCCAGATTGAATATTGTTACCCCGCACAGCGGCGAATTGTCCGAT
GAGTCCCTTTAA

Protein sequence : 
MASNTTLSNARILVVDDEPDLRTLYELTLLREGYRVETAGNLAEALQHLGERRFDVVITDMRLPDGLGLELIQQLRAQQR
PERCVVITAYGSAENAVESLKTGAFDYLTKPVDLKQFRSVIASAVQDPAPRPTAVGRAGSPLPESSDAVLQRLVGESDSM
RRVKERIVKVARSMAPVLVHGESGTGKELVARAIHANSHRTGSAWVAVNCSAIPESLLEAEFFGSKKGAYTGSTQDRVGF
FQAASGGTLFLDEIGDLPLSMQSKLLRAIQERCIRPIGSSQEEPVDVRIISATHKDLSLEVLAGRFRQDLYYRLDVIEIE
IAPLRERREDLPALCQTLLRRIAFEAGIPVPTLSKAGLEQLSQDPLPGNVRELENLLQRAVALSDGDELQLELTARQPLT
QDASFLDSGPTPLDDDQTTIPSDLQSHLDTQERDILIQALRETGFNRTAAAARLGLSQRQMGYRIARLNIVTPHSGELSD
ESL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 6e-73 41
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 6e-73 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rfer_3345 YP_524585.1 Fis family two component sigma-54 specific transcriptional regulator BAC0467 Protein 3e-71 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rfer_3345 YP_524585.1 Fis family two component sigma-54 specific transcriptional regulator VFG1214 Protein 2e-97 49