|
Name : Rfer_3243 (Rfer_3243) Accession : YP_524483.1 Strain : Rhodoferax ferrireducens T118 Genome accession: NC_007908 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 3594384 - 3595742 bp Length : 1359 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTAGACATCACCACCCTCCGAAAAGACCTCGACTCGGTTATTGCCCGTCTCGAGACCCGTAAATCACCGCAAGCCTT TCTCAATGTGGACACCTTCAGGACTTTGGAGGCCGAGCGCAAGACGATTCAGATGCGCACCGAAGAGTTGCAGGGCAAGC GCAATACCTTGAGCAAACAAATTGGCCAGCTCAAGGCCAAGGGCGCAGCCGGTCAAGCCGAGTCGGATGCAGTCATGGCC GAGGTGGCGGGCCTGAAGGCTGAGCTGGAAACCTCCGCAACCCGGCTGGAACAAATTCAGCTGGAGTTGCAGGCGCTGTT GCTGGGCGTGCCCAATTTGCCACACGAGAGCGTGCCGGTGGGCGCGGATGAGCATGGCAATGTGGTGGTGCGCAGCTGGA GTCCCGACGGCAAGGGGCCCAAGGCGTTTGATTTTGAGGTGAAAGACCACGTTGATATCGGCACCCCGCTGGGGCTCGAC TTCGAGTTGGGCGTCAAGCTCACCGGCGCCCGCTTCACCGTCATGAAGGGTCTGATTGCACGCCTGCACCGGGCGCTGGC CCAGTTCATGCTGGACGTGCAAACCCAGGAACACGGCTACACCGAGTGCTACACGCCTTACATCGTCAATGCGCAAAGCA TGCGCGGCACCGGACAGTTGCCCAAGTTTGAAGCCGACTTGTTTGCCGCCAAAAAAGGCGGGCAAGAGGCTGAAGCGGCG CCCGACAACAGCGCACTTTATTTGATTCCGACCAGCGAAGTGCCGCTGACCAACTTTGTGCGCGACGTGGTGTTGGCCGA GGCCGAGTTGCCGGTCAAGCTCACCGCACATACGCCGTGTTTTCGCTCCGAGGCTGGCAGTGCCGGGCGCGACACGCGTG GCCTGATTCGCCAGCACCAGTTTGACAAGGTCGAGATGGTGCAGATCGTGCACCCCGACAAGAGTTACGAGACGCTGGAA CAGATGACCGGTCACGCGGAAGCTATTTTGCAAAAGCTGGGTCTGCCCTACCGGGTGATGTCCTTGTGCACCGGCGACAT GGGCTTTGGTGCCAGCAAGACCTACGATCTGGAAGTCTGGTTGCCGGCGCAAAACACCTACCGTGAAATCAGCTCGGTGT CGAACTGCGAGGCCTTCCAGGCACGTCGCCTGCAAGCGCGCTTCAAGAACGCACAGGGCAAGAACGAGCTGGTGCACACC CTCAACGGCTCGGGACTGGCGGTCGGGCGCGCGCTGGTGGCGGTGTTGGAAAACTACCAGAATGCCGATGGCTCGGTCAC CGTACCGCAGGCTTTGCGTCCTTATGTGGGTGGCCAAAAAGTTCTGGGTGCCACCGCCATGAATGACATGGATATGTAG Protein sequence : MLDITTLRKDLDSVIARLETRKSPQAFLNVDTFRTLEAERKTIQMRTEELQGKRNTLSKQIGQLKAKGAAGQAESDAVMA EVAGLKAELETSATRLEQIQLELQALLLGVPNLPHESVPVGADEHGNVVVRSWSPDGKGPKAFDFEVKDHVDIGTPLGLD FELGVKLTGARFTVMKGLIARLHRALAQFMLDVQTQEHGYTECYTPYIVNAQSMRGTGQLPKFEADLFAAKKGGQEAEAA PDNSALYLIPTSEVPLTNFVRDVVLAEAELPVKLTAHTPCFRSEAGSAGRDTRGLIRQHQFDKVEMVQIVHPDKSYETLE QMTGHAEAILQKLGLPYRVMSLCTGDMGFGASKTYDLEVWLPAQNTYREISSVSNCEAFQARRLQARFKNAQGKNELVHT LNGSGLAVGRALVAVLENYQNADGSVTVPQALRPYVGGQKVLGATAMNDMDM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-99 | 55 |
