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Name : Rfer_0028 (Rfer_0028) Accession : YP_521321.1 Strain : Rhodoferax ferrireducens T118 Genome accession: NC_007908 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 29673 - 32813 bp Length : 3141 bp Strand : - Note : - DNA sequence : ATGGTTGAATCCGACCTCGAGCAACTCGCCCTCACTTGGTTTCAGGACACCGGCTGGGACTACCGCGCTGGCCCCGACAT TGCACCTGACAGCGACAGCCCCCAGCGCAGCGACTACCGCCAAATGCTGCTGCAAGGCGAGCTGCGCGAGGCGCTCTCAA GGCTGAACCCGCAAGTCCCCGCCGCTGTGCTGGACGATGTGGCGCACCAGTTGAGCAAGCCAGACCACCCTTCGCTCATC CAAAGCAACCGTGCGTTCCACGAAGCGCTTGTGGGCGGTGTACCGGTAGAGGTGGAAGTGAACGGCGAGCGCCGGGGCGA CCGCGTGGTGTTGGTGGACTTTGACACGCCCGAGCGCAACCGCTTCTTGGTGGTGAACCAGTTCACCGTGCAAGGCAGCA AGCAGCCGCGCCGGCCCGACCTGGTGTGTTTCATCAACGGCCTGCCCATTGCGGTGATAGAGCTGAAAAATTTGGCTGCG GAGCAGGTGGGTGTGCAAGATGCCTTCCACCAGTTGCAGACCTACAAAGACGAGCTGGCCGACCTGTTTGTAACCAACGA GGCCTTGGTGGCTTCCGACGGTTTGCATGCGCGCATAGGCTCGCTCACCGCCAGCTTTGAGCGCTTTTTGCCCTGGCGCA CGGTCAAGAACGAGAACGACCGCCCGCTGCTGGAGTTTGAGCTGGAAAAAGTGGTGCGCGGCTTCTTTGCGCCCGCGCTC TTACTGGACTACCTGCGCTACTTCGTGCTGTTTGAGATGGCCGACGGCCAGGTAGTGAAAAAGATTGCTGCCTATCACCA GTTTCACGCGGTGCGTGCGGCGGTCAAGGCGGCGGTGATTGCCGCCACGCCACCCGCCACCAACGCGGCGCAAGAGCAAT GGGCCAGCTATGCCGAGCGGGTGAAGCCCGGCTCGCGCATGGGTGGCATTGTGTGGCACACGCAGGGCTCGGGCAAAAGC ATTTCCATGGTGTGCTTTGCCGCCAAGCTGATGCAACAGCCAGAAATGCACAACCCCACGCTGGTGGTGGTGACGGACCG CAACGATCTGGACGGCCAGTTGTTCCAGACCTTTGTGGGTGCACGCAGCCTGCTGCGCGAGCAGCCGCAGCAAGCGGGCA GCCGCGACGAACTGCGCGCGTTGCTGGCCGGGCGGCCATCGGGCGGCATCATCTTCACCACGGTGCAGAAGTTCACGCCC GATGCTGGGGAAGAAGTGTTCCCGCTGCTGAGTGAACGCAACAATATCGTGGTGATGGCCGACGAAGCGCACCGCTCGCA ATACGGCTTTCGCGCGGTGCTGGACAAGAAGACCGGCAAATACAAATACGGCTTTGCCAAGCACCTGCGTGATGCGCTCA AGAACGCCACCTTCGTCGGCTTTACCGGCACGCCCATTGAGGCGGGCGACCACGACACCCGCGCCGTGTTTGGCGAGTAC GTCAGCATTTATGACATTCAAGACGCGGTGGACGATGGCGCCACAGTGCCGATCTTCTACGAGAGCCGCCTGGCCAAGCT GAACTTGAACCAGGTGGAGATGGAGAAGCTGAACGCAGATGTGGAAGATGTCTTTGAAGACGAAGAAGACGCAGCGCTGA TAGAGGCCGAGAAAACCCGTTGGGCGGCGTTGGAAAAACTGGTGGGTGCCAAGGAGCGCGTGGACCTGGTGGCGGCAGAC ATCGTGCAGCACTTTGAGGCGCGCAATACGGCGGTGGCGGGCAAGGGCATGGTGGTGGCCATGAGCCGCGAGATTTGCGC TCGACTTTACGCAGCCATCATCAAGCTGCGCCCCGACTGGCACAGCGACGACCCCGCACAGGGGGCTATCAAGGTGGTGA TGACCGGCTCTGCAGCAGACGCTACGCTGTTGCAGCCGCACATCTACAACAGCGCTGCCAAGAAGCTGCTGGAGCGCCGC TTCAAAGACGCAACGGACCCGCTGAAGCTGGTGATCGTGCGCGACATGTGGCTCACCGGTTTTGACGTGCCCTGCCTGCA CACCATGTACATCGACAAGCCGATGCGCGACCACAACCTAATGCAGGCCATTGCCCGCGTGAACCGCGTGTTTCGCGACA AAGAGGGCGGCCTGGTGGTGGACTACATCGGCATTGCCGCCGAGCTGCGCAAGGCGCTACGCACCTACACCGAGAGCAAG GGCAAGGGCCAGCCCACGCTGGATGCCACCGAGGCACTTGCCAAGTTGCAAGAGCTGATGGAGGTGGCGCGCCACCTGCT GCACGGTTTTGATTTCAGCGCCTACCGCACCCAGGCCACCACGCTGCTGCTGCCTGCCGCCAACTTTGTGCTGGGACTGG ACGACGGCAAGAAGCGCTGGGCCGATGTGGTGCTGGCCATCACCAAGGCGTTTTCGCTGTGCGGCACGCTGGACGATGCG GCGCTGCTGCGCGAGGAGATTGCGTTCTTCCAGGCTATCAAGGCGGTGATTGCCAAGGCCACCACGTCGGACGCCAAGCT GTCGGAAGAAGGCCGCAACGCGGTGCTCAAGCAGATTCTGGACAACGCGGTGGTGGCCGAGGGGGTGGAAGACATCTTCA AGCTCGCCGGGCTGGAGCGGCCCGACATTGGCATCCTGTCCGATGCTTTTTTGGAAGAAGTGCGCCAGCTACCGCAACGC AACTTTGCGGTGGAGTTGCTGCAAAAGTTGCTGAATGACCAGGTGAAGTCGCGCATGCGGACCAACGTGGTGATGGAGCG CAAGTTCAGCGAGCGCCTGCAGGCTGCGCTGAACCGCTACCTGAGCCGCGCCGTGGAGAGTGCGCAGGTGATTGAAGAAT TGATTGCCATGGCCAAGGAGTTCCGCGAAGCCGCGCTGCGCGGTAATAAGCTGGGCCTCAACACGTCGGAACTGGCTTTT TACGATGCGCTGACAGACAACGAAAGCGCCGTGCGCGAGATGGATGATGAGGTGCTAAAGAAGATCGCGGTGGAGATCAC CGAGAAGCTGCGCAACAGCACCTCGGTGGACTGGCAAAAGCGCGAGAGCGTGCGCGCCCGCCTGCGTAACCTGGTGCGTA TCACCCTGCGCCGCTACAAGTACCCGCCCGATATGCAGGAAGAAGCCATCCGGCTGGTGTTGGAGCAAGCGGAGCGGCTG TCAGACGCTTGGACAAAGTGA Protein sequence : MVESDLEQLALTWFQDTGWDYRAGPDIAPDSDSPQRSDYRQMLLQGELREALSRLNPQVPAAVLDDVAHQLSKPDHPSLI QSNRAFHEALVGGVPVEVEVNGERRGDRVVLVDFDTPERNRFLVVNQFTVQGSKQPRRPDLVCFINGLPIAVIELKNLAA EQVGVQDAFHQLQTYKDELADLFVTNEALVASDGLHARIGSLTASFERFLPWRTVKNENDRPLLEFELEKVVRGFFAPAL LLDYLRYFVLFEMADGQVVKKIAAYHQFHAVRAAVKAAVIAATPPATNAAQEQWASYAERVKPGSRMGGIVWHTQGSGKS ISMVCFAAKLMQQPEMHNPTLVVVTDRNDLDGQLFQTFVGARSLLREQPQQAGSRDELRALLAGRPSGGIIFTTVQKFTP DAGEEVFPLLSERNNIVVMADEAHRSQYGFRAVLDKKTGKYKYGFAKHLRDALKNATFVGFTGTPIEAGDHDTRAVFGEY VSIYDIQDAVDDGATVPIFYESRLAKLNLNQVEMEKLNADVEDVFEDEEDAALIEAEKTRWAALEKLVGAKERVDLVAAD IVQHFEARNTAVAGKGMVVAMSREICARLYAAIIKLRPDWHSDDPAQGAIKVVMTGSAADATLLQPHIYNSAAKKLLERR FKDATDPLKLVIVRDMWLTGFDVPCLHTMYIDKPMRDHNLMQAIARVNRVFRDKEGGLVVDYIGIAAELRKALRTYTESK GKGQPTLDATEALAKLQELMEVARHLLHGFDFSAYRTQATTLLLPAANFVLGLDDGKKRWADVVLAITKAFSLCGTLDDA ALLREEIAFFQAIKAVIAKATTSDAKLSEEGRNAVLKQILDNAVVAEGVEDIFKLAGLERPDIGILSDAFLEEVRQLPQR NFAVELLQKLLNDQVKSRMRTNVVMERKFSERLQAALNRYLSRAVESAQVIEELIAMAKEFREAALRGNKLGLNTSELAF YDALTDNESAVREMDDEVLKKIAVEITEKLRNSTSVDWQKRESVRARLRNLVRITLRRYKYPPDMQEEAIRLVLEQAERL SDAWTK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 61 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 46 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 46 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 46 |
