Gene Information

Name : Rfer_2580 (Rfer_2580)
Accession : YP_523828.1
Strain : Rhodoferax ferrireducens T118
Genome accession: NC_007908
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 2839429 - 2840835 bp
Length : 1407 bp
Strand : -
Note : -

DNA sequence :
ATGTCTGCTGTACTTTCTGCTGTGCCTTTTGACTACGGTCAAGACGCCCAAGTCGCGCAATTGCGCATTCCCCCGCACTC
CATCGAAGCCGAGTCCAGCGTTCTGGGCGGGCTGCTGCTCGACAACGGCGCTTGGGACCGTGTCAACGACCTGTTGACCG
AGGGTGATTTTTACCGTTACGAGCACCGCATGGTGTTTATCGCGCTGGGCGCCTTGATCAACGCAACCAAACCGGCCGAC
GTGATCACGGTGTTCGAGCAGTTGCAAAACCAGGGCAAGGCCGAAGAAATCGGTGGCCTGGCTTACCTCAACTCGCTGGC
CCAGTATGTGCCCAGTGCGGGCAACATCCGCCGCTACGCCGAGATCGTGCGGGAACGCTCGATTCTGCGCAAGCTGGTGG
CCGCCAGCGATGAAATCTCCACCAACGCCTTTAACCCCAAAGGTCGGGCCGTGGCCGCGATTCTGGACGAGGCCGAGCAA
AAAATCTTCAACATCGGCGAAGAGGGCGCGCGCACGCGCCAGGGTTTTCAGGCCATGGACTCGCTGGTGGTGGCGCTCTT
GGACCGGGTGCAGGAGATGGCCGACAACCCCAACGATGTCACCGGGGTGCCAACCGGCTTTTACGACCTGGACCGCATGA
CGGCTGGTTTTCAAGCGGGCGATCTGGTGGTGCTGGCGGCGCGGCCGTCCATGGGCAAAACGGCGCTGGCGATCAACATC
GCCGAGCACGTGGCACTCAACGAAGGCCTGCCGGTGGCCGTGTTCTCGATGGAAATGGGCGCCGCGCAATTGGCGGTGCG
TATTGTGGGCTCGATCGGGCGTATCAATCAGGGCCACTTGCGCACCGGCAAGCTGACGGACGAGGAATGGCCGCGTCTGA
CCGAGGCGATCGAGAAGCTGCGCACCATTTCCCTGCACATCGACGAAACGGCGGGCTTGACCTCCAGCGAACTGCGCGCC
AACGCACGGCGCCTGTCGCGCCAGTGCGGCAAGCTCGGTCTGATCGTGGTCGATTATTTGCAACTGATGAGTGGCTCCAA
CAGCGATGGCGAAAACCGCGCCACCGAGCTGGGCGAGATTTCGCGGGGCCTGAAAATGCTGGCCAAAGAGTTGCAATGCC
CGGTGATTGCCTTGTCTCAGCTCAACCGCAGCGTCGAAACGCGGCCCGACAAACGCCCGATGATGAGTGACTTGCGCGAG
TCCGGCGCCATTGAGCAGGACGCCGACATCATCATGTTCATTTACCGCGACGAGTACTACACCAAGGACGCCTGCAAAGA
GCCGGGCGTGGCCGAGATCATCATTGCCAAGCAGCGTAACGGCCCCACCGGCGTGGTCAAGCTGGCCTTCCTGAACACCA
TCACCAAGTTTGAGTCGCTGGCGTCTGGAGGGAGTGGCGATTTTTAA

Protein sequence :
MSAVLSAVPFDYGQDAQVAQLRIPPHSIEAESSVLGGLLLDNGAWDRVNDLLTEGDFYRYEHRMVFIALGALINATKPAD
VITVFEQLQNQGKAEEIGGLAYLNSLAQYVPSAGNIRRYAEIVRERSILRKLVAASDEISTNAFNPKGRAVAAILDEAEQ
KIFNIGEEGARTRQGFQAMDSLVVALLDRVQEMADNPNDVTGVPTGFYDLDRMTAGFQAGDLVVLAARPSMGKTALAINI
AEHVALNEGLPVAVFSMEMGAAQLAVRIVGSIGRINQGHLRTGKLTDEEWPRLTEAIEKLRTISLHIDETAGLTSSELRA
NARRLSRQCGKLGLIVVDYLQLMSGSNSDGENRATELGEISRGLKMLAKELQCPVIALSQLNRSVETRPDKRPMMSDLRE
SGAIEQDADIIMFIYRDEYYTKDACKEPGVAEIIIAKQRNGPTGVVKLAFLNTITKFESLASGGSGDF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 9e-95 48
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 2e-80 46
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 9e-84 45
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 5e-84 45
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 3e-79 44
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 3e-79 44
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 3e-81 43
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 8e-83 43
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 6e-68 41