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Name : Rfer_2126 (Rfer_2126) Accession : YP_523381.1 Strain : Rhodoferax ferrireducens T118 Genome accession: NC_007908 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.18 Position : 2302559 - 2304847 bp Length : 2289 bp Strand : + Note : - DNA sequence : ATGAAATTTCGCTTTCCCATCATCATCATTGACGAGGATTTTCGCTCTGAAAACGCCTCCGGCCTGGGTATACGGGCGCT GGCCCAAGCCATCGAGTCAGAAGGCCTGGAAGTGCTGGGTGTGACCAGTTATGGTGACCTGAGCCAGTTTGCGCAGCAGC AAAGCCGCGCCAGTGCCTTCATCATGTCCATTGATGACGAGGAATTTACCCCCGGTCCGGACCTCGACCCGGCCGTGGTG AACTTGCGCCACTTCATCGAAGAGGTGCGTCGTAAAAATCTTGATGTGCCAATCTATATCTACGGCGAGACCAAGACCTC ACGCCATTTGCCCAATGACATCCTGCGCGAGCTGCATGGTTTCATTCACATGTTTGAGGACACGCCCGAGTTCGTGGCGC GTCACATCATTCGCGAAGCCAAAGCTTATCTGGAGAGCGTGCAGCCGCCGTTTTTCAAGGCCTTGTTGGACTACGCCGAG AATGGTTCCTACTCCTGGCACTGCCCGGGGCACTCCGGTGGCGTCGCCTTCCTGAAAAGCCCGGTCGGTCAGATGTACCA CCAGTTTTATGGCGAGAACATGCTGCGTGCCGACGTCTGCAACGCAGTGGAAGAACTGGGCCAACTGCTGGACCATGATG GTGCGATTGGCAAGAGCGAGCGTAATGCGGCGCGCATCTTCAATGCCGACCACTGCTTTTTTGTCACCAACGGCACCAGT ACCAGCAACAAGATGGTGTGGCACCACACGGTGGCGCCCAATGACGTGGTGGTGGTGGACCGCAATTGCCATGTGTCCAT CCTGCACGCCATCATCATGACCGGGGCCATTCCGGTGTTTTTGAAGCCCACGCGCAACCACTTCGGCATCATCGGGCCGA TTCCCAAGAGCGAGTTTGAGCCAGCGTCCATCAAGGCAAAAATCAAGGCCAACCCCTTGATCAAGGAGCATCTGCCCGAC GTGGACCTGAGCCGGATCAAGCCGCGCGTGCTGACGCTGACCCAGTCCACCTACGACGGTGTGCTGTACAACACCGAGAC GGTCAAAAACATGCTGGACGGCTATGTGGAGAACATCCACTTTGACGAAGCCTGGTTGCCACATGCGGCATTTCACCCGT TTTACGGCACCTACCATGCGATGGGTAAAAAGCGCTCGCGCCCCAAGCACGCCATGGTCTATGCCACGCAATCGATCCAC AAGCTGCTGGCCGGCATCAGCCAGGCCAGCCAGGTGCTGGTGCAGGATTCGCAAACCGTCAAGCTCGACAAGCACCTGTT CAACGACGCGTATCTGATGCACACCTCTACCTCCCCGCAGTACAGCATCATTGCCAGTTGCGACGTGGCTGCCGCCATGA TGGAGCCACCCGGCGGCACCGCGCTGGTGGAAGAAAGCATCGCTGAAGCGCTCGATTTCCGCCGTGCCATGCGCAAGATC GACGAAGAATACGGCACCGACTGGTGGTTCAAGGTGTGGGGACCTGAAAAACTGGTGGAAGAAGGCATTGGCCGCGCCGA CAGCTGGATCATCAAAGGCGAGTCAGCCAAAGCCAAGGCGGGTGTCAACTGGCACGGTTTTGGCAAAATGGCCACCGGCT TCAACATGCTCGACCCGATCAAATCGACGGTGGTCACGCCCGGCATGGACTTGAACGGCAAGTTTGCCAAGACCGGCATT CCGGCCAGTATCGTCACCAAGTTCCTCGCCGAACACGGCGTGGTGGTCGAGAAAACCGGGCTTTACAGCTTTTTCATCAT GTTCACCATCGGCATCACCAAGGGCCGCTGGAACAGCATGTTGACCGCCTTGCAGCAGTTCAAGGACGACTACGCCAAGA ACCAGCCGATGTGGCGCATCCTGCCCGAGTTTTGCCAGAAGTACCCCAAATACGAAACCATGGGGCTGGCTGACCTGTGC CAGCACGTGCACCAGCTCTACGCCAAATATGACATTGCGCGCCTGACGACCGACATGTATTTAAGTGACCTGGCGCCGGC CATGAAGCCCAGCGATGCTTATGCCCACATTGCGCTACGCAAGACCGAGCGCGTGGCGATTGATGATCTGGAAGGTCGCA TCACGGTTGGCCTGGTCACACCTTACCCGCCCGGCATTCCCTTGCTGATACCGGGTGAAGTGTTCAACAAGAAAATCGTG GACTACCTGAAATTTGCCCGCGAGTTCAATACCCAGTGCCCCGGTTTTGAAACCGACATTCATGGACTGGTGGAAGAACA GGAGGCTGACGGGCAGCGGCACTATTACGCGGATTGCGTCAAGTCCTGA Protein sequence : MKFRFPIIIIDEDFRSENASGLGIRALAQAIESEGLEVLGVTSYGDLSQFAQQQSRASAFIMSIDDEEFTPGPDLDPAVV NLRHFIEEVRRKNLDVPIYIYGETKTSRHLPNDILRELHGFIHMFEDTPEFVARHIIREAKAYLESVQPPFFKALLDYAE NGSYSWHCPGHSGGVAFLKSPVGQMYHQFYGENMLRADVCNAVEELGQLLDHDGAIGKSERNAARIFNADHCFFVTNGTS TSNKMVWHHTVAPNDVVVVDRNCHVSILHAIIMTGAIPVFLKPTRNHFGIIGPIPKSEFEPASIKAKIKANPLIKEHLPD VDLSRIKPRVLTLTQSTYDGVLYNTETVKNMLDGYVENIHFDEAWLPHAAFHPFYGTYHAMGKKRSRPKHAMVYATQSIH KLLAGISQASQVLVQDSQTVKLDKHLFNDAYLMHTSTSPQYSIIASCDVAAAMMEPPGGTALVEESIAEALDFRRAMRKI DEEYGTDWWFKVWGPEKLVEEGIGRADSWIIKGESAKAKAGVNWHGFGKMATGFNMLDPIKSTVVTPGMDLNGKFAKTGI PASIVTKFLAEHGVVVEKTGLYSFFIMFTIGITKGRWNSMLTALQQFKDDYAKNQPMWRILPEFCQKYPKYETMGLADLC QHVHQLYAKYDIARLTTDMYLSDLAPAMKPSDAYAHIALRKTERVAIDDLEGRITVGLVTPYPPGIPLLIPGEVFNKKIV DYLKFAREFNTQCPGFETDIHGLVEEQEADGQRHYYADCVKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 9e-103 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rfer_2126 | YP_523381.1 | lysine decarboxylase | VFG1670 | Protein | 5e-103 | 41 |
