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Name : Rfer_1832 (Rfer_1832) Accession : YP_523091.1 Strain : Rhodoferax ferrireducens T118 Genome accession: NC_007908 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 1969677 - 1972325 bp Length : 2649 bp Strand : - Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : ATGCAAAACGAAAAAACACAAAGCAAGAAACCTTCTCCGGTACCAGCTGAACATTCCCCCATGATGGCCCAGTATTTCGG CCTCAAAGCTGACTACCCGGACACCCTGCTTTTTTACCGCATGGGCGACTTCTACGAGCTGTTTTTTGCCGACGCCGAGA AGGCCGCGCGCCTGCTCAACATCACCCTCACCCAGCGCGGCCAGAGCGCCGGGCAGCCCGTGGTCATGGCCGGCGTGCCG TTTCATTCCGTGGACACGTATCTGGCCCGGCTCATCAAATTGGGCGAATCAGTGGCGATTTGCGAGCAGGTCGGCGAGGT GACCGGCAAAGGCCCGGTGGAGCGCAAGGTGGTGCGCGTCGTCACCCCTGGCACGCTGACCGATCTGGAACTGCTAAGCG ATAAATCCGAGTCGATGCTGCTGGCTGTGCACCAGGGTCCGCGCAACACGTGCGGCCTGGCGTGGCTCAGCGTGACGCAG GGCGAAGTGCATCTGGCCGAGTGCGCGGTGGACGACCTGGCGCAGTGGGTGCTTCGCATCGCTCCCGGCGAGATCATTTT CAGCGCGGGTACGACACCGACTTTTGAAGCGCGCCTGCGTGGCGCGCCGCTCGCGGGCGCGGTATCTGTCAGCGTGCGGC CCGACTGGCAATTTGACGCAGGACTGGGTGAAAAAAAGCTGCTGGCCCAACTACAAGCCGCCAGTCTGGCACCGTGGCAG GCGCAAGATTTGCCGCAGGCCCACGCCGCCGCCGCCGCCCTCCTGGGTTACGCCGAGCACACACAAGGCCAGGCGCTGAC CCATATCCAGAGTGTGCGAGTGCAGCGCAGCGACGAGTTGATCGACCTGCCGCCAACCACCCGGCGCAACCTGGAGCTCA CCCAGACTTTGCGCGGTGAAGATCAACCCACGCTTTTTTCTCTGCTTGACACCTGCATGACTGGCATGGGCAGTCGCCTG CTGAAGAACTGGTTGCTTGAACCCCGGCGCGACCGTGGCGAGGCGCAGCAACGCCTGAACGCCATCGCCGCCCTGCAAAG CGGTGACGCGCACACGTCGCGTGCGGGCGTCTGGCGCCAACTGCGCGAACAACTCAAGGGCAGCACCGACGTGGAGCGCA TCACCGCCCGCATCGCGCTGCGCCAGGTGCGTCCCCGTGAACTGGTCGCACTCCAGTTAACGCTACAAAAAACAGAGCTA CTAACGCATACAACACGGGGGCTAGAGGTCTATTTGACTCAAATATCTGGCCATTTGCTGGCACCCGAAGCTTGTGCCGA CTTGTTGGCCCGCGCCATTGACCCCGAGCCCGCCGTGCTGGTGCGCGATGGCGGCGTGATCGCCAGCGGCTTTGACGCCG AGCTGGACGAACTGCGCGCCATTCAAACCAATTGCGACGGCTTCTTGCTCGACTTGGAAGTGCGTGAAAAGGCCCGCACC GGCATTGCCAACTTGCGCGTGCAGTTCAACAAGGTGCACGGCTTCTTCATCGAGGTCACACAAGGGCAAGTCGACAAAGT GCCCGACGACTACCGACGCCGCCAGACGCTGAAAAACGCCGAGCGCTTCATCACGCCCGAACTCAAGGCGTTTGAAGACA AGGCCCTGAGCGCGCAAGAGCGGGCACTGGCGCGTGAAAAATGGCTGTACGAGCAGGTGCTGGACCAACTGCAAGTGTTT GTGCCCGCCCTCACCCGAGTCGCACGCGCCCTGGCCACGCTGGACGCGCTGTGCGCCCTGACTGAGCGCAGCCTGACACT GGATTGGTGCGCGCCGCAGTTTGTCAAAGAGCCGTGTCTGGACATCACGCAGGGTCGCCACCCGGTGGTACAGGCCCGCC TGGCCGAGACCAGCAGCGGCGCCTTCATCGCCAACGACACCCGCATGGGCCCGAAGCAGCGCATGCAGATCATCACCGGC CCCAACATGGGCGGCAAGTCCACCTACATGCGCCAGATCGCCGTGATCGTGCTGCTGGCCAGCATGGGCAGTTATGTGCC GGCCAGCGCCTGCCGGCTGGGGCCGATCGACGCCATCCACACCCGCATCGGCGCTGCCGACGATCTGGCCAACGCCCAGT CCACCTTCATGCTCGAGATGCTGGAGGCCGCGCAGATACTGATTGCTGCGACGCCCAATTCACTGGTGCTGATGGACGAG ATTGGCCGCGGCACCTCGACCTTTGACGGCCTGGCGCTGGCGTCAAGCATTGCCACCCAGCTGCACGACAAAACGCAGGC CTACACCCTGTTTGCCACCCACTACTTCGAGCTGACCGAGTTCCCGGCCCAGCACCATGCAGCCATCAACGTGCACGTGA GTGCCGCCGAGGCGGGCCGCGACATTGTGTTTTTGCATGAAATCCAGCCAGGCCCCGCCAGCAAGAGCTATGGCATCCAG GTCGCGCGCCTGGCCGGCATGCCGGCCGCCGTTCTGAACCAGGCCCGCCAGACGCTGGCCGCGCTGGAATCACAAGCGAC CCAAAATCAGGCCCAGGTCGATTTGTTCGCCGCGCCGCCGGCTACCGAAACAGCAGCTGACAGCGCCATCGAGACCGCCG TTGCAGCCCTGAATCCTGACAATTTAAGTCCGCGCGAGGCGCTGGAGGCGCTGTACCAGTTGAAGAAGCTGGCGTCTGGC AAGGCATGA Protein sequence : MQNEKTQSKKPSPVPAEHSPMMAQYFGLKADYPDTLLFYRMGDFYELFFADAEKAARLLNITLTQRGQSAGQPVVMAGVP FHSVDTYLARLIKLGESVAICEQVGEVTGKGPVERKVVRVVTPGTLTDLELLSDKSESMLLAVHQGPRNTCGLAWLSVTQ GEVHLAECAVDDLAQWVLRIAPGEIIFSAGTTPTFEARLRGAPLAGAVSVSVRPDWQFDAGLGEKKLLAQLQAASLAPWQ AQDLPQAHAAAAALLGYAEHTQGQALTHIQSVRVQRSDELIDLPPTTRRNLELTQTLRGEDQPTLFSLLDTCMTGMGSRL LKNWLLEPRRDRGEAQQRLNAIAALQSGDAHTSRAGVWRQLREQLKGSTDVERITARIALRQVRPRELVALQLTLQKTEL LTHTTRGLEVYLTQISGHLLAPEACADLLARAIDPEPAVLVRDGGVIASGFDAELDELRAIQTNCDGFLLDLEVREKART GIANLRVQFNKVHGFFIEVTQGQVDKVPDDYRRRQTLKNAERFITPELKAFEDKALSAQERALAREKWLYEQVLDQLQVF VPALTRVARALATLDALCALTERSLTLDWCAPQFVKEPCLDITQGRHPVVQARLAETSSGAFIANDTRMGPKQRMQIITG PNMGGKSTYMRQIAVIVLLASMGSYVPASACRLGPIDAIHTRIGAADDLANAQSTFMLEMLEAAQILIAATPNSLVLMDE IGRGTSTFDGLALASSIATQLHDKTQAYTLFATHYFELTEFPAQHHAAINVHVSAAEAGRDIVFLHEIQPGPASKSYGIQ VARLAGMPAAVLNQARQTLAALESQATQNQAQVDLFAAPPATETAADSAIETAVAALNPDNLSPREALEALYQLKKLASG KA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 7e-149 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rfer_1832 | YP_523091.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 4e-162 | 47 |
