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Name : lysS (Rfer_1784) Accession : YP_523044.1 Strain : Rhodoferax ferrireducens T118 Genome accession: NC_007908 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1919356 - 1920918 bp Length : 1563 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCAGACCACCCAAGCATCCCAGCCCCCGTCGACGAAAACCAACTGATCCTGGAGCGACGTGACAAGCTCAAAGCCTT GCGCCAGCTGCAGGCCGAGGGCAAGGGCGTCGCCTTCCCCAACGATTTCAAGCCAAGCGACCACGCCGCTGATCTGTTTG CCGCCCACGTCGGCCAGACACCGGAAGGCCTGATCGAGCAAGGCGCAACGGCCAAAGTCGCCGGGCGCATGATGCTCAAG CGCGTCATGGGCAAGGCCAGTTTTGCCACCCTGCAAGACAGCACGGGGCGCATCCAGCTCTATATCAAGGGGGAAGATGT CGGCGCCGAGGTGTACGCCAGCTTCAAGCACTGGGATTTGGGCGACATCGTGGCCGCAGAGGGCAAGATTTTCAAGACAA AAACCGGTGAGCTCTCGATTCACGCCACCAGCTTGCGACTGCTGACCAAGAGCCTGCGTCCGATGCCCGACAAGTTTCAC GGCATGAATGACCAGGAAACGAAGTACCGCCAGCGCTATGTCGATTTGATGATGGATGAGACCGCGCGCGCGCGCTTCAC GGCCCGCAGCAAAGCGGTCAGCGGCATCCGCGAGTTCATGGTGGCGCACGATTTCCTGGAAGTGGAGACGCCGATGCTGC ACCCCATCCCCGGGGGCGCCAACGCCAAGCCTTTCACCACGCACCACAATGCGCTGGACCAGCAAATGTTCCTGCGTATT GCACCCGAGCTCTACCTCAAGCGCCTGATCGTGGGCGGTTTCGAGCGCGTGTTCGAGATCAACCGCAGTTTTCGCAATGA AGGCATCTCGGTGCGCCACAACCCCGAGTTCACCATGATGGAGTTCTACGCCGCCTACTGGGACTACCAGGACCTGATGA CTTTCACCGAAAAGCTGATTCGCGACGCGGCGCAAAAGGCCGTCGGCACCCTGGAGCTGAGCTATGGCGGCCGAGCGGTC GATTTGACCCAGCCGTTTGAACGCCTGACGATTCATGAGGCCATCTGCAAGTTCACCGAAGCCGGTCAAGAGCTCGAAGG CGCGAACCTCGACGGCTGCCTGAAGGTGGACAACGCCGCCTGGCTCATCAGCGCCCTGCGCAAATTGGGCCTGACCGAGG GCAAGCACAAGCTCTCCACCCGCTCGCTGGCCAGCCTGCAGGTGCTGTACTTTGAAGAAACCGTGGAAGAAAAACTGTGG CAGCCGACCTTCATCTGCGAGCACCCGGTCGAAATCTCGCCGCTGGCCCGCGCCAGCGACCACAAACCCGGCGTGACCGA GCGTTTTGAGCTCTACATCACCGGCCGCGAATTCGGCAACGGATTCAGCGAGCTCAACGACGCCGAAGAGCAAGCCTCCC GCTTTCACGCCCAGGTGGCGGCCAAGGACGACGGCGACGACGAGGCCATGTACTACGACCACGACTTCATTCGCGCGCTG GAATACGGCATGCCGCCCACCGGCGGCTGCGGCGTGGGCCTGGACCGGCTGATGATGCTGCTGACCGACAGCAGCAGCAT CCGCGACGTGATCCTGTTCCCGGCACTGCGGCACGAAGTTTAA Protein sequence : MSDHPSIPAPVDENQLILERRDKLKALRQLQAEGKGVAFPNDFKPSDHAADLFAAHVGQTPEGLIEQGATAKVAGRMMLK RVMGKASFATLQDSTGRIQLYIKGEDVGAEVYASFKHWDLGDIVAAEGKIFKTKTGELSIHATSLRLLTKSLRPMPDKFH GMNDQETKYRQRYVDLMMDETARARFTARSKAVSGIREFMVAHDFLEVETPMLHPIPGGANAKPFTTHHNALDQQMFLRI APELYLKRLIVGGFERVFEINRSFRNEGISVRHNPEFTMMEFYAAYWDYQDLMTFTEKLIRDAAQKAVGTLELSYGGRAV DLTQPFERLTIHEAICKFTEAGQELEGANLDGCLKVDNAAWLISALRKLGLTEGKHKLSTRSLASLQVLYFEETVEEKLW QPTFICEHPVEISPLARASDHKPGVTERFELYITGREFGNGFSELNDAEEQASRFHAQVAAKDDGDDEAMYYDHDFIRAL EYGMPPTGGCGVGLDRLMMLLTDSSSIRDVILFPALRHEV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-129 | 53 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 1e-74 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_523044.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-129 | 53 |
