Gene Information

Name : Rfer_1354 (Rfer_1354)
Accession : YP_522619.1
Strain : Rhodoferax ferrireducens T118
Genome accession: NC_007908
Putative virulence/resistance : Unknown
Product : phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1457772 - 1458986 bp
Length : 1215 bp
Strand : +
Note : -

DNA sequence :
ATGTCGCTGACTGATACCGCCATCAAGAAGGCCAAGCCGGGCGACAAGCCTGTGAAACTGAGCGACGGCAAGGGCCTGTA
CTTGCTGGTTAATCCCGTTGGCTCGAAGCTGTGGCGCTGGAAATACCGGTTTCTGGGCAAAGAGAAGGTCATGTCGCTGG
GCGCTTACCCGGACGTTTCCCTTGCCCAGGCGCGTGATGGCATGGGCGCGGCGCGCAAGTTATTGGCCAGCGGCACGGAC
CCTATGGCGCAACGGGCTACCGACAAGATCACGAAGCAGGCATCCGCTGAAAACTCTTTCCAGTCCGTGGCCTTGCTGTG
GTGGGACCACTGGCATGGTGCCAAGAGTGCGCGGCATGCGGATGATGTGATGCGTCGCCTCAAGGCTGATGTGTTCCCCG
CCATTGGGGCGCGCCCGGTGTCGGAGATACAGGCACATGAGCTGGTGGGAATGGTGCAGACGATTTCAAAGCGCGGGGCC
TTGGATATTGCCAAACGGGCTTTGCAGACCTCTGGACAGGTTTTCCGGTACGCGGTGGCCCATGGCCTTGCCCAACGCAA
CCCGGCCAGCGACATCAAGCCCAGTGATGTGCTGGCGTCCCGCAAGGCCGCCAACTACGCGCGTATCAGCGCCAAGGAGC
TGCCCGAGTTGCTGCGGCACATCGAAGGCTATGCGGGCGCTGCCGTGACGCGCTTGGCCATGAAGTTGATGGCGCTGACC
TTTGTTCGCACGTCGGAGCTGATCGGCGCACGCTGGGCCGAGTTTGACTTGGAAGCGCGGCGCTGGGACATTCCCGCTTC
GCGCATGAAGATGAAAACGCCGCACATCGTGCCGCTGTCCACCCAGGCGGTGAACGTGCTGCAAACGCTGCAACTGGTGT
CGGGGCGCGGCACGCTGCTGTTTCCGGGCGAGCGCGACCACGAAAAGTCCATGAGCAACAACACCATTTTGGGTGCGCTG
GACCGCATGGGCTACAAGGGGCGCATGACCGGCCACGGATTCCGTGGCGTGGCTTCCACGTTGCTGCATGAAATGGGTTT
TGACCATGCCCACATTGAATTGCAACTGGCGCACCAGGAACGCAACGAGGTGAGCGCGGCCTACAACCACGCGACCTACC
TCAAGCAGCGGACCAAGATGATGCAGCACTGGGCGGACTACCTGGATAGCTGCACGACGGGCCAGGTGCTGGCGTTTCAA
CGTGCCGCAGCGTGA

Protein sequence :
MSLTDTAIKKAKPGDKPVKLSDGKGLYLLVNPVGSKLWRWKYRFLGKEKVMSLGAYPDVSLAQARDGMGAARKLLASGTD
PMAQRATDKITKQASAENSFQSVALLWWDHWHGAKSARHADDVMRRLKADVFPAIGARPVSEIQAHELVGMVQTISKRGA
LDIAKRALQTSGQVFRYAVAHGLAQRNPASDIKPSDVLASRKAANYARISAKELPELLRHIEGYAGAAVTRLAMKLMALT
FVRTSELIGARWAEFDLEARRWDIPASRMKMKTPHIVPLSTQAVNVLQTLQLVSGRGTLLFPGERDHEKSMSNNTILGAL
DRMGYKGRMTGHGFRGVASTLLHEMGFDHAHIELQLAHQERNEVSAAYNHATYLKQRTKMMQHWADYLDSCTTGQVLAFQ
RAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAD44730.1 Int Not tested SHI-2 Protein 6e-86 47
int CAC39282.1 integrase Not tested LPA Protein 1e-86 47
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-87 47
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-84 46
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-84 46
int AAC31482.1 CP4-like integrase Not tested LEE Protein 7e-85 46
int ACU09430.1 integrase Not tested LEE Protein 7e-85 46
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-77 46
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-77 46
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 6e-82 46
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-84 46
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-84 46
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-84 46
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 8e-77 45
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-69 43
int AAK16198.1 Int Not tested PAI-I AL862 Protein 7e-71 43
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 7e-71 43
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 5e-71 42
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 5e-71 42
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 8e-70 42
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-66 42
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-70 42
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-66 42
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-69 42
int AAL51003.1 CP4-like integrase Not tested LEE Protein 7e-70 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 5e-70 42
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 9e-71 42
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 8e-69 42
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-69 42
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-69 42
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-69 42
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-69 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-69 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 8e-70 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 5e-70 41
int2 NP_993013.1 integrase Not tested HPI Protein 5e-66 41
int CAA21384.1 - Not tested HPI Protein 5e-66 41
int CAA08754.1 integrase Not tested HPI Protein 1e-66 41
int CAB59974.1 integrase Not tested HPI Protein 2e-67 41
int YP_002346908.1 integrase Not tested HPI Protein 5e-66 41
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 5e-66 41
int CAC81896.1 integrase Not tested LEE II Protein 3e-62 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rfer_1354 YP_522619.1 phage integrase VFG0783 Protein 4e-85 46
Rfer_1354 YP_522619.1 phage integrase VFG0598 Protein 7e-85 46
Rfer_1354 YP_522619.1 phage integrase VFG0626 Protein 2e-71 42
Rfer_1354 YP_522619.1 phage integrase VFG1693 Protein 7e-71 42