Gene Information

Name : Rfer_1242 (Rfer_1242)
Accession : YP_522507.1
Strain : Rhodoferax ferrireducens T118
Genome accession: NC_007908
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 1337447 - 1338217 bp
Length : 771 bp
Strand : +
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence : 
ATGAAGACAATCGCCATTATTCCGGCGCGGATGGGGGCATCGCGCTTTCCGGGCAAACCATTGCATCCCATACTGGGTAT
ACCTATGTTGGGGCACTGTTACTTTCGCACCCGTATGGTGCCAGGCCTTGCAGAAACTTATGTCGCTACTTGTGACCAAG
AGATTGCTGACTACGTTACGTCCATTGGCGGTAAGGCCATCATGACATCGCACAGCCACAACCGTGCCACAGATCGCACG
GCAGAGGCCATGCTCAAAATAGAGGTCGAAACTGGCGACCGTGTTGATGTGGTCATCATGGTGCAGGGGGACGAACCTTT
AATCTTGCCGGAAACCATTGGTGAAACCCTGCCGCATTTCAATGACCCCACTGTGGAGATTGTCAACATCATGTCTCGTT
TGCGCACGCGTGAGCAGTTTGAAGATAAGAACAATGTCAAGGTGGTTGTTAACCAGCAAAAAGATGCGTTGTACTTTTCG
CGTGAGCCTATCCCATCACCCTGGCGCGGCGTTGAACAGGTGCCCATGTACATGCAAGTGGGTGTGATTGCGTTTAGACG
GGATGTAATCATTCGTTTTAATAGCATGCCTGAAACAACACTTGAAAAAATTGAATCTGTCGATATGAACCGCGTGCTTG
AAACCGGTGGCCGAATTCGCATGGTACTAACCGACGCTGTCACCATTGGTGTTGATACGCCGCAAGAGGCAGATGAAGTG
GGCCGACTAATGCAGGGCGATGCGTTGTTGACCAAATATCCGCAGCCATGA

Protein sequence : 
MKTIAIIPARMGASRFPGKPLHPILGIPMLGHCYFRTRMVPGLAETYVATCDQEIADYVTSIGGKAIMTSHSHNRATDRT
AEAMLKIEVETGDRVDVVIMVQGDEPLILPETIGETLPHFNDPTVEIVNIMSRLRTREQFEDKNNVKVVVNQQKDALYFS
REPIPSPWRGVEQVPMYMQVGVIAFRRDVIIRFNSMPETTLEKIESVDMNRVLETGGRIRMVLTDAVTIGVDTPQEADEV
GRLMQGDALLTKYPQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 1e-30 42
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 8e-31 42
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 2e-30 41