Gene Information

Name : DSY4246 (DSY4246)
Accession : YP_520479.1
Strain : Desulfitobacterium hafniense Y51
Genome accession: NC_007907
Putative virulence/resistance : Unknown
Product : pyridoxal biosynthesis lyase PdxS
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0214
EC number : -
Position : 4832559 - 4833434 bp
Length : 876 bp
Strand : -
Note : with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate

DNA sequence :
ATGGATCGTAAACGATATGAATTGAACAAAGAGCTGGCTCAGATGTTAAAGGGCGGCGTAATTATGGATGTGACCACTCC
GGAGCAGGCCAAGATTGCGGAAGCGGCCGGCGCCTGTGCGGTGATGGCACTGGAAAGGATTCCGGCGGATATCCGGGCGG
TCGGCGGAGTTTCCCGCATGAGCGATCCGAAAATGATTAAAGGAATCATGGAAGCCGTCTCGATTCCCGTGATGGCGAAA
TGCCGCATTGGTCATTTCGTGGAGGCTCAAATTTTGGAGGCTGTTGAAATCGATTATATCGATGAGAGTGAAGTGCTTTC
CCCGGCTGATGATGTTTATCACATCGATAAGACCAGATTCAAGGTGCCTTTCGTCTGTGGGGCGAAGGATTTAGGGGAGG
CTTTGCGCCGCATCAATGAAGGGGCTGCCATGATTCGTACTAAAGGGGAACCGGGTACTGGGGATATTGTTCAGGCAGTG
CGCCATATGCGCATGATCAACCGTCAAATCAGCCGCCTTGCCGGTATGCGGGAAGACGAGCTGTTCCAGGAGGCTAAAGA
GCTGCAGGTTCCCTATGATTTAGTGCTTTATGTTCATGAGCACAAACGCCTGCCGGTGGTCAACTTTGCCGCCGGTGGCG
TGGCAACTCCTGGAGATGCGGCCCTGATGATGCAGCTGGGGGCTGAAGGAGTATTTGTGGGCTCCGGCATCTTTAAATCG
GGAGATCCGGAAAAAAGAGCCCAAGCCATCGTCAAAGCCGTGACCAATTACCAGGATCCCAAGGTGCTGGCAGAGCTCTC
TGAAGATCTGGGTGAAGCCATGGTAGGAATTAACGAACAGGAAATCGAGCTGCTGATGGCAGAGCGGGGCAAGTAA

Protein sequence :
MDRKRYELNKELAQMLKGGVIMDVTTPEQAKIAEAAGACAVMALERIPADIRAVGGVSRMSDPKMIKGIMEAVSIPVMAK
CRIGHFVEAQILEAVEIDYIDESEVLSPADDVYHIDKTRFKVPFVCGAKDLGEALRRINEGAAMIRTKGEPGTGDIVQAV
RHMRMINRQISRLAGMREDELFQEAKELQVPYDLVLYVHEHKRLPVVNFAAGGVATPGDAALMMQLGAEGVFVGSGIFKS
GDPEKRAQAIVKAVTNYQDPKVLAELSEDLGEAMVGINEQEIELLMAERGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pdxS YP_005137204.1 pyridoxine biosynthesis protein Not tested Not named Protein 2e-89 71
DIP0227 NP_938620.1 pyridoxal biosynthesis lyase PdxS Not tested Not named Protein 2e-89 71
pdxS YP_005141805.1 pyridoxine biosynthesis protein Not tested Not named Protein 3e-89 71