|
Name : lcrD (CF0548) Accession : YP_515465.1 Strain : Chlamydophila felis Fe/C-56 Genome accession: NC_007899 Putative virulence/resistance : Virulence Product : type III secretory flagellar biosynthesis Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 644525 - 646654 bp Length : 2130 bp Strand : + Note : - DNA sequence : ATGAACAAGCTACTCAATTTTGTCAGTAGAACCTTTGGGGGAGATGCCGCCCTAAATATGATCAATAAATCGAGTGATCT CATCCTTGCCTTATGGATGATTGGTGTCGTTTTAATGATCATCTTGCCCCTACCTCCGACTATTGTCGACTTGATGATCA CGATCAATTTGGCTGTTTCAGTCTTCCTGTTAATGGTAGCTTTATATATCCCCAGTGCTCTGCAATTATCAGTTTTCCCG TCCCTACTCTTAATTACAACAATGTTTCGCTTAGGAATTAACATTTCTTCCTCGAGACAGATTCTTCTCAAAGCTTATGC AGGTCACGTTATTCAAGCTTTCGGAGACTTCGTTGTTGGAGGGAATTACGTTGTCGGATTTATTATCTTTTTAATCATTA CAATTATTCAATTTATTGTTGTTACCAAAGGTGCTGAGCGTGTTGCTGAGGTTGCTGCGAGATTTAGATTAGACGCTATG CCTGGTAAACAAATGGCTATTGACGCTGATTTGCGTGCAGGCATGATTGATGCGCAACAAGCTCGCGATAAACGAGGCAT GATTCAAAAGGAAAGTGAACTTTATGGAGCCATGGACGGTGCCATGAAGTTCATTAAAGGGGACGTTATTGCAGGTATCG TGATCTCCTTGATTAACATCGTTGGTGGTTTGACTATCGGTGTAGCTATGCATGGCATGGACTTGGCTCAAGCTGCTCAC GTGTATACTCTTTTATCTATCGGTGACGGATTAGTTTCTCAGATTCCTTCGCTCCTCATCTCTTTAACTGCTGGTATCGT TACAACTCGAGTTTCTAGTGATAAAAACACGAACTTGGGTAAAGAGATTTCCTCTCAATTAGTTAAAGAACCTAGAGCCT TGCTCCTAGCCTCTGCAGCAACTTTAGGTGTGGGCTTCTTTAAAGGATTCCCTCTGTGGTCATTCTCAATTCTATCTTTT ATCTTTGGTCTTCTTGGAGTTATTCTTCTCGCTAAGAAAAATAGCACAGCTAAAAAGGGGGCTTCCGGTGCATCGACAAC AGTCGGAGCTGCTGCAGATGGCGCCGCTACAGCTGGAGACAATCCTGACGACTACTCTCTTACTCTGCCGGTAATTTTAG AATTAGGAAAAGACCTCTCTGCTCTAATTCAGCATAGAACGAAATCAGGCCAAAGCTTCATTGACGATATGATCCCTAAA ATGCGTCAAGCTTTATATCAAGATATTGGTATTCGTTATCCAGGAATTCATGTACGTACCGACTCTCCTTCCTTAGAAGG TTTCGATTACATGATCCTTCTTAACGAAGTTCCTTATGTTCGAGGAAAAATTCCTCCGCACCACGTCTTGACTAATGAAG TAGAGGAAAATCTTAAGAGATACAATCTTCCTTTCATTACGTATAAAAATGCTGCAGGCTTACCTTCTGCATGGGTTAGT GAGGATGCTAAAACCATTTTAGAAAAAGCAGCCATTAAGTACTGGACTCCTTTAGAGGTGATCATTCTTCATTTATCTTA CTTCTTCCACAGAAGCTCTCAAGAGTTCTTAGGAATTCAAGAAGTACGCTCTATGATTGAATTTATGGAACGTTCGTTCC CAGATCTTGTTAAGGAAGTCACGCGACTTATTCCTCTACAAAAACTTACTGAAATTTTCAAACGTTTGGTACAAGAGCAA ATTTCTATTAAAGATTTGCGCACCATTTTAGAATCCTTAAGTGAGTGGGCTCAGACAGAAAAAGATACCGTATTGCTTAC CGAGTACGTACGTTCCTCTCTCAAACTCTATATTAGCTTTAAATTTTCTCAAGGGCAGTCAGCAATTTCTGTCTATTTAT TAGATCCAGAAATCGAAGAGATGATCCGTGGAGCAATTAAGCAAACTTCTGCAGGATCTTATCTTGCTTTAGATCCAGAT TCTGTAAACCTCATCTTAAAATCTATGAGGAATACGATCACGCCAACACCTCCAGGAGGTCAACCCCCTGTGCTGTTGAC AGCAATTGACGTAAGACGATATGTAAGAAAATTAATAGAGACAGAATTCCCTGATATTGCTGTGATTTCTTATCAAGAGA TTCTCCCAGAGATTCGTATCCAGCCATTAGGAAGAATTCAGATTTTCTAA Protein sequence : MNKLLNFVSRTFGGDAALNMINKSSDLILALWMIGVVLMIILPLPPTIVDLMITINLAVSVFLLMVALYIPSALQLSVFP SLLLITTMFRLGINISSSRQILLKAYAGHVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAARFRLDAM PGKQMAIDADLRAGMIDAQQARDKRGMIQKESELYGAMDGAMKFIKGDVIAGIVISLINIVGGLTIGVAMHGMDLAQAAH VYTLLSIGDGLVSQIPSLLISLTAGIVTTRVSSDKNTNLGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSFSILSF IFGLLGVILLAKKNSTAKKGASGASTTVGAAADGAATAGDNPDDYSLTLPVILELGKDLSALIQHRTKSGQSFIDDMIPK MRQALYQDIGIRYPGIHVRTDSPSLEGFDYMILLNEVPYVRGKIPPHHVLTNEVEENLKRYNLPFITYKNAAGLPSAWVS EDAKTILEKAAIKYWTPLEVIILHLSYFFHRSSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQ ISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDPD SVNLILKSMRNTITPTPPGGQPPVLLTAIDVRRYVRKLIETEFPDIAVISYQEILPEIRIQPLGRIQIF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 8e-140 | 45 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 1e-95 | 43 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 7e-96 | 41 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-96 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lcrD | YP_515465.1 | type III secretory flagellar biosynthesis | VFG2126 | Protein | 0.0 | 91 |
| lcrD | YP_515465.1 | type III secretory flagellar biosynthesis | VFG0064 | Protein | 2e-142 | 46 |
| lcrD | YP_515465.1 | type III secretory flagellar biosynthesis | VFG0384 | Protein | 9e-139 | 45 |
| lcrD | YP_515465.1 | type III secretory flagellar biosynthesis | VFG0198 | Protein | 6e-129 | 45 |
