Gene Information

Name : Jann_4199 (Jann_4199)
Accession : YP_512141.1
Strain : Jannaschia sp. CCS1
Genome accession: NC_007802
Putative virulence/resistance : Virulence
Product : ATPase FliI/YscN
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 4304676 - 4305998 bp
Length : 1323 bp
Strand : +
Note : -

DNA sequence : 
ATGTCTGACGCTTTCGACCTCCTGCGCGCGCAACTACGTGGCATCAAAACGGCTCAGGCGGTGGGCAAAATCTCCGCTAT
GGGGCGCGATGTCGTGTCTGTATCGGGCTTGGACCGAGTCGCGTCCCTGGGTGATCGTGTCCGGTTCAATGCCGATGCGA
CAGGAGAAATTCTCGCCATGGAAGCCGGTCGCGCCCGTGTCATGCCGGATGGGCCCGCCGATGGCCTGCGTTTGGGCGCA
GACGTGACCCACCTGGGGCCCGCAAGTATCTCACCCGATGACAGCTGGCTTGGCCGTGTGATTGACCCCGACGGGCAGCC
ATTGGATGGTCGAGCGATTTTGCCGGGTCCAGTCGCGTATCCTTTGGTCTCACCGCCACCATCCCCCGCTGCCCGCCGTG
GCTTGGGTGCACGCCTTCAAACGGGATTCGCAGTTTTCGATACTCTGTTGCCCATCGTGCGCGGGCAGCGGGTGGGGCTT
TTCGCCGGATCTGGAGTCGGCAAGTCACGCCTGACGGCGGCCTTGGCGGACGGAATGGCCGCCGATGTCGTGGTAATCGG
TCTGATTGGAGAGCGGGGTCGCGAGGTCCGGGATTTCGTGAGCGAAACCCTTGGACCCGAGGGGCTGGCCCGCTCCGTGG
TCATTGCCGCCACCTCGGACCGCCCGGCTCTGACCCGCGCGAGGGCCGCATATACGATGATGGCAGTCGCGGAATTCTTC
CGAAATCAGGGGCGCAATGTCATTGTGCTGGCTGATTCCATCACCCGGTTTGCCGAGGCACAACGCGATGTTGCTGCCGC
GGCAGGGGAACCTTTCGGCCCCAGCGGTTTCCCGGCGTCGATGGCGCAAACGATAATGGCGTTGGCTGAACGCGCCGGAC
CAGGATCGGGAACGCAAGGGGACATTACCGCGATTTTTTCAGTCCTGGTTGCAGGATCTGACATGGACGGACCGGTGGCA
GACGTCATGCGCGGGACCTTGGATGGGCATATCGTGCTAACCCGCGAGATCGCCGAACGTGGTCGATACCCGGCGATTGA
TCTCTTGCGCTCAGTCAGCCGATCCCTGCCCAACGCGGCATCAGATGAGGAAAACAGGATGATCTTGCGCGCGCGCCAAT
TGATGGGCGCATATGATCGCGCTGAAATGATGCTGCAGGCTGGATTGTACACGCCAGGTGCGGACCCGTTGACGGACGGC
GCAGTCAAAGTCTGGGCCGATCTGGACGCCTTTGTTGGCTGCACCGCCGCTGTCGACATAGGGCAGAGCTTCAATGATTT
GCGCAAGGTACTATCCGCCGCCGACGTTCCTGGGGGCAAATAG

Protein sequence : 
MSDAFDLLRAQLRGIKTAQAVGKISAMGRDVVSVSGLDRVASLGDRVRFNADATGEILAMEAGRARVMPDGPADGLRLGA
DVTHLGPASISPDDSWLGRVIDPDGQPLDGRAILPGPVAYPLVSPPPSPAARRGLGARLQTGFAVFDTLLPIVRGQRVGL
FAGSGVGKSRLTAALADGMAADVVVIGLIGERGREVRDFVSETLGPEGLARSVVIAATSDRPALTRARAAYTMMAVAEFF
RNQGRNVIVLADSITRFAEAQRDVAAAAGEPFGPSGFPASMAQTIMALAERAGPGSGTQGDITAIFSVLVAGSDMDGPVA
DVMRGTLDGHIVLTREIAERGRYPAIDLLRSVSRSLPNAASDEENRMILRARQLMGAYDRAEMMLQAGLYTPGADPLTDG
AVKVWADLDAFVGCTAAVDIGQSFNDLRKVLSAADVPGGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 7e-56 47
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 7e-56 47
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 5e-61 47
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 4e-61 47
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 1e-59 46
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 3e-59 46
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-59 46
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-59 46
lscN AAO18044.1 LscN Virulence TTSS locus Protein 4e-60 46
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 7e-61 43
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 6e-56 43
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 4e-59 43
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 4e-58 43
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 8e-59 43
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-58 43
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-59 43
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-58 43
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 4e-59 43
escN CAC81862.1 EscN protein Virulence LEE II Protein 3e-59 43
escN CAI43874.1 EscN protein Virulence LEE Protein 3e-59 43
escN AAK26715.1 EscN Virulence LEE Protein 4e-59 43
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 4e-59 43
escN AAL57542.1 EscN Virulence LEE Protein 4e-59 43
escN YP_003223475.1 translocator EscN Virulence LEE Protein 4e-59 43
escN AAC31513.1 L0034 Virulence LEE Protein 9e-59 43
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 9e-59 43
escN AAC38383.1 EscN Virulence LEE Protein 2e-59 43
escN YP_003236088.1 translocator EscN Virulence LEE Protein 6e-59 43
escN NP_290268.1 hypothetical protein Virulence LEE Protein 1e-58 43
ECs4568 NP_312595.1 EscN Virulence LEE Protein 1e-58 43
unnamed AAL06369.1 EscN Virulence LEE Protein 3e-57 43
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-59 42
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 6e-59 42
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-59 42
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-59 42
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-59 42
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-60 42
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-60 42
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 1e-53 41
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 5e-59 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jann_4199 YP_512141.1 ATPase FliI/YscN VFG2331 Protein 7e-63 45
Jann_4199 YP_512141.1 ATPase FliI/YscN VFG0192 Protein 1e-61 45
Jann_4199 YP_512141.1 ATPase FliI/YscN VFG0730 Protein 1e-59 43
Jann_4199 YP_512141.1 ATPase FliI/YscN VFG0812 Protein 5e-59 43
Jann_4199 YP_512141.1 ATPase FliI/YscN VFG0515 Protein 1e-59 42
Jann_4199 YP_512141.1 ATPase FliI/YscN VFG0390 Protein 7e-64 41
Jann_4199 YP_512141.1 ATPase FliI/YscN VFG1254 Protein 2e-61 41
Jann_4199 YP_512141.1 ATPase FliI/YscN VFG2499 Protein 8e-63 41