Gene Information

Name : Jann_4136 (Jann_4136)
Accession : YP_512078.1
Strain : Jannaschia sp. CCS1
Genome accession: NC_007802
Putative virulence/resistance : Virulence
Product : TRAP C4-dicarboxylate transport system permease DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 4246101 - 4247396 bp
Length : 1296 bp
Strand : -
Note : -

DNA sequence : 
ATGAGCTTTGAGGTTCTGGCCTGCATCGCCACGCTGTTTTTCCTCGCGGGCATCGGCACACCCATAGGCTATTCGATCAT
CCTCGCCTCGCTGGTCTACCTGGGCCTCGGCGGCATGGACCTGGCGCTGGCCGGTGAAAAGATTATCCAGGGCCTCTACC
GCAGTTTCGTGCTGCTGGCCGTGCCGCTGTTCATCGTCGCCGCCAACATCATGAACGCGGGCACGATTTCCGACCGGTTG
CTGAATTTCTGCGTCGCCGCCGTGGGGCGCTTTCGGGGCGGGTTGGGCCATGTGAATGTTGTGGCCTCGCTGATCTTTTC
GGGCATGTCCGGGTCTGCCGTGGCGGATGCGGCGGGCATCGGCAAGATCATCATCCAGATGATGACCAGGGATGGCCGCT
ACGGGCGTGGATACGCCGCCGCGATCACAGCTGCATCTGCTACGATCGGGCCGATCATCCCGCCCTCGATCCCCATGGTG
CTTTACGCGCTCGTGTCCCAATCCTCCATCGGGGCATTGTTTTTGGCGGGGATCATTCCTGGGCTGATCATGGGTATCGT
GCTGATGGCGATGAACAGTGTCATCGCCCACAAACGTGGCTTTGCGCTGGAAGAGCCGGTGCCGCTGCGCGATCTGCCAA
AGAAAACCGCAAACGCCTTTCCCGCACTTCTGATGCCGGTGATCCTGCTCTACGGCATCTACGGTGGCGTCACGACACCG
ACGGAGGCCGCTGCCGTCGCCGCGCTCTATGCGCTTCTGCTGGCCGGGCTGTTCTACCGCGCGCTCAGCCTCCGGGGCCT
CTACGACATCTTCGTGGACAGCGCGCGCGCCTCCGCGTCTGTCGGCGTTGTCATCGGCGGTGCGCTGATCCTGAATTTTA
TCGTCGCGTCTGAAAATATCCCCGGCATGGTTGCTGATGCGCTTGTGGGGATCGAGATGAGCCCGACGTTCTTCCTGCTG
CTGGTGATGCTGCTTGTCCTGCTCCTCGGCTGCGTTCTGGATGCCACGACCATCATCCTCGTGATCGTGCCCCTTTTCAT
TCCCGCCTGCCGAGAGCTTGGAATCGACCTTGTCCATTTCGGCGTGCTGGTCGTCGTCAATTCCATGATTGGCCTGATCA
CGCCGCCCTACGGCATCCTGCTGTTCGTCATCAACGCCGTCACCGGCATTCCGCTGCGAGAGATCATATCCGAGATCTGG
CCGTTCCTGGCCGTCCTGATCCTTGCACTCTTGCTCCTCGTCTTTATGCCGGGCCTTGTTCTATGGTTGCCGGGCCAGTT
CGGCTACGGCGGCTGA

Protein sequence : 
MSFEVLACIATLFFLAGIGTPIGYSIILASLVYLGLGGMDLALAGEKIIQGLYRSFVLLAVPLFIVAANIMNAGTISDRL
LNFCVAAVGRFRGGLGHVNVVASLIFSGMSGSAVADAAGIGKIIIQMMTRDGRYGRGYAAAITAASATIGPIIPPSIPMV
LYALVSQSSIGALFLAGIIPGLIMGIVLMAMNSVIAHKRGFALEEPVPLRDLPKKTANAFPALLMPVILLYGIYGGVTTP
TEAAAVAALYALLLAGLFYRALSLRGLYDIFVDSARASASVGVVIGGALILNFIVASENIPGMVADALVGIEMSPTFFLL
LVMLLVLLLGCVLDATTIILVIVPLFIPACRELGIDLVHFGVLVVVNSMIGLITPPYGILLFVINAVTGIPLREIISEIW
PFLAVLILALLLLVFMPGLVLWLPGQFGYGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 2e-38 44
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 2e-38 44
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 2e-38 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jann_4136 YP_512078.1 TRAP C4-dicarboxylate transport system permease DctM VFG1110 Protein 1e-38 44