Gene Information

Name : Jann_0257 (Jann_0257)
Accession : YP_508199.1
Strain : Jannaschia sp. CCS1
Genome accession: NC_007802
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 258706 - 259374 bp
Length : 669 bp
Strand : -
Note : -

DNA sequence : 
ATGACCGCACCGCTCCTGTCCCTCCGCGATATTCGCAAGACCTACCCGTCTGACTCTGGCCCTTTGCGGGTGCTGGACGG
CGTGTCCGTGACGCTGGACGCGGGCGAAACCCTGGCGCTGACGGGGGAAAGCGGCTCGGGCAAATCCACGCTGCTCCACC
TGTCCGGCGGCCTCGACCAGCCCGATGGTGGGGAGGTCGTGCTGGACGGCCAAGACATCGGCCGCCTTGATGATGCCGGG
CGGGCGGCGGTGCGTCGAACGCGGATCGGGTTGATCTTTCAGCAGTTCAACCTTGTGCCGTCATTATCCGTGGGTGCCAA
TATCGCGCTGCAGGCACGGCTTGCCGGACAACATGATGAGGGCTTTGCTTTGCGACTGGCCGACCGGCTTGGGTTGAGCG
ACCTGCGCAACCGATACCCCGAGCAACTGTCCGGCGGACAGCAACAGCGCGTCGCCATCGCCCGGGCGCTGGCCTCCAAG
CCCGCGTTGATCCTGGCCGATGAACCGACCGGCAATCTGGATGAGGAAACCGGGGACGCGGTCCTGCGCCTGCTTTTGGA
GCTGGTGGAGGAAACAGGCGCGGGGCTTCTGATGGTCACCCATTCGCCTCGGCTGGCCGAACGTTTGTCGCGGCGCGTGC
ATCTGTCCCGTGGCCAATTGGACGGCTAG

Protein sequence : 
MTAPLLSLRDIRKTYPSDSGPLRVLDGVSVTLDAGETLALTGESGSGKSTLLHLSGGLDQPDGGEVVLDGQDIGRLDDAG
RAAVRRTRIGLIFQQFNLVPSLSVGANIALQARLAGQHDEGFALRLADRLGLSDLRNRYPEQLSGGQQQRVAIARALASK
PALILADEPTGNLDEETGDAVLRLLLELVEETGAGLLMVTHSPRLAERLSRRVHLSRGQLDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-29 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-29 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-29 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-29 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jann_0257 YP_508199.1 ABC transporter-like protein CP001581.1.gene798.p Protein 1e-36 46
Jann_0257 YP_508199.1 ABC transporter-like protein NC_008702.1.4606598. Protein 4e-29 45
Jann_0257 YP_508199.1 ABC transporter-like protein CP001581.1.gene598.p Protein 6e-36 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jann_0257 YP_508199.1 ABC transporter-like protein VFG2059 Protein 3e-12 42