|
Name : clpB (ECH_0367) Accession : YP_507187.1 Strain : Ehrlichia chaffeensis Arkansas Genome accession: NC_007799 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 357222 - 359795 bp Length : 2574 bp Strand : + Note : identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 DNA sequence : ATGGATCTCAATCAATTTACTGATATGTCAAAGAATTTAATAATGCAGGCGCAAACTACAGCAATTGCATCAGGGCATCA ATCTTTGATACCAGAGCATTTACTTAAAGTAATGTTAGATACTAAAGATGAGCTTATTGAGCTGTTGCTGACTTCATGTG GATGTGATATTGATAAGATATACAGTGATATAAAACTCTCCTTAAGTAAATTACCTGTTGTAAGTGGAAGTGGTAGTGGT CATATACATTTATCAAAAGAAATGGCTCAGGTTTTAGAAGAAGCTATTAGTTTAGCAAAAAGGAATCAGGATACTTATGT AACTGTGGAGAGATTATTACAAGCTCTTGCAGTTGTTAAAGACACTAGTGTTTACAAGATACTACTTGCACATGGAGTAA CTCCTGTTAAGTTAGAATCACTAATACTTAATATGCGTAATGGATCTAAGGCTGATACTATTAATGCTGAACATAAATTT AATGCTCTGAAAAAATATGCTAAAGATATTACAGAATCTGCCATGGCTGGGAAACTTGATCCAGTTATTGGAAGAGATGA AGAGATTAGACGTACAATGCAAGTTTTATCACGCAGAACAAAGAATAATCCTGTATTAATTGGAGAACCTGGAGTTGGTA AGACAGCAATTATTGAAGGATTGGCACAGCGTATTGTGGTAGGTGATGTTCCTGTTGGACTAAGAAATGCAAAAATAATG GCACTGGATCTTGGAATGCTTGTTGCTGGAACAAAATATAGAGGGGAATTTGAGGAAAGATTAAAATATGTAATTAATGA AATAGTGGCGTCAAATGGTGCGGTTATATTGTTTATTGATGAATTACACACATTAGTTGGAGCTGGTGCTACAGATGGTG CAATGGATGCATCGAACTTGTTAAAACCTGCTTTAGCAAGGGGTGAAATACATTGTATAGGAGCAACAACATTGGATGAA TATAGGCAACACATAGAAAAAGATGCTGCATTGGCTAGAAGGTTTCAACCTGTGTTTGTTTCTGAATCTACTGTTAATGA TACTATCTCTATTTTGCGTGGATTGAAAGAAAAATATGAAGTACACCATGGTATTAGGATTATGGATAGTGCGATTATTG CTGCTTCAACTTTGTCAAATCGTTATATTACAGATAGGTTTTTACCAGATAAAGCTATAGATCTAATTGATGAAGCAGCA AGTCGTGTAAGAATAGAGATTGATAGTAAACCTGAGGTAATTGACGAATTAGATAGAAAAATTATTCAATTGAAGATTGA GGCTGGAGTTTTAGAAAAAGAAAATACTGAATCTTCAAAACAGCGTTTAGCCCAATTAAGTGAAGAATTGAATAAATTAA GTATTCAAGCAACAGAATTAAATAGTAAGTGGCAGGCTGAGAAAATGAAGATATTAAAAATGCAAGAATGTGTGGAAAAG TTAGATAATGCAAGAAATGATTTAGAAAAAGCTCAAAGGTCTGGTAATTTGGCAAAAGCTGGCGAATTGATGTATGGAAT TATCCCAGAACTTGAAAAAGAGTTAAAAAAATGTGAAAAACCTAGTAGTAACATGTTGAAAAGGGAAGTGACTGAAAGTG ATATAGCAAGTATTGTATCACGGTGGACAGGTATTCCTATTGAAAACATGATGAGCAGTGAAAAAGAAAAATTGCTGCGT ATGGAAGAAGAGATAGGGAAAACAGTCATTGGTCAAGAAAGTGCTATTAAAGCAGTAAGTGATGCTGTTAGAAGATCGCG TGCAGGAGTACAAGATGCCAATAAACCATTAGGATCTTTTTTATTCCTTGGACCTACTGGAGTAGGAAAAACAGAATTAG TAAAAACATTAGCTGAATTTTTATTTTGTGATAAATCTGCTTTATTGAGGTTTGATATGTCTGAGTTTATGGAAAAGCAT GCTGTATCTCGGTTAATAGGTGCTCCTCCAGGATATGTAGGATATGATCAAGGTGGTATGTTGACTGAATCTGTGAGGAG GAGACCTTATCAAGTTATACTTTTTGATGAAATAGAGAAAGCACATGGAGATATTTTTAATATTTTATTGCAAGTATTAG ATGAGGGACGGTTAACTGATAACCATGGTAAATTGGTTGATTTTCGTAATACAATACTGGTTTTAACATCAAACTTAGGA CAAGAAATACTGATTAATAATAAGGAAGATGTTGATGGAGAGTCAGTAAAAAAATCTATAACTAGTGTGTTACAACATCA TTTTCGGCCAGAATTTTTAAACAGATTAGATGAAATTATTGTATTTCATAGATTAACTAAGGAACATATAGAGAAAATTA TAGATGTACAATTTTCTCTGTTACAGAAAATTGTTGCTCAAAAAGAGTTAGAGATTAGTTTATCTTCGGAGGCAAAATCT TGGTTGATGAATAATGGCTATGATTCGTTATATGGGGCAAGACCTTTGAAAAGATTAATACAACAAAAAATACAAAATAG TTTAGCAAAGTTAATACTTGCAAATCAAGTTAGTAAGGGAGATAAGCTAGAAGTAGTTTTGTTGAATGACGATTTAATTA TTAATAAGTTATAG Protein sequence : MDLNQFTDMSKNLIMQAQTTAIASGHQSLIPEHLLKVMLDTKDELIELLLTSCGCDIDKIYSDIKLSLSKLPVVSGSGSG HIHLSKEMAQVLEEAISLAKRNQDTYVTVERLLQALAVVKDTSVYKILLAHGVTPVKLESLILNMRNGSKADTINAEHKF NALKKYAKDITESAMAGKLDPVIGRDEEIRRTMQVLSRRTKNNPVLIGEPGVGKTAIIEGLAQRIVVGDVPVGLRNAKIM ALDLGMLVAGTKYRGEFEERLKYVINEIVASNGAVILFIDELHTLVGAGATDGAMDASNLLKPALARGEIHCIGATTLDE YRQHIEKDAALARRFQPVFVSESTVNDTISILRGLKEKYEVHHGIRIMDSAIIAASTLSNRYITDRFLPDKAIDLIDEAA SRVRIEIDSKPEVIDELDRKIIQLKIEAGVLEKENTESSKQRLAQLSEELNKLSIQATELNSKWQAEKMKILKMQECVEK LDNARNDLEKAQRSGNLAKAGELMYGIIPELEKELKKCEKPSSNMLKREVTESDIASIVSRWTGIPIENMMSSEKEKLLR MEEEIGKTVIGQESAIKAVSDAVRRSRAGVQDANKPLGSFLFLGPTGVGKTELVKTLAEFLFCDKSALLRFDMSEFMEKH AVSRLIGAPPGYVGYDQGGMLTESVRRRPYQVILFDEIEKAHGDIFNILLQVLDEGRLTDNHGKLVDFRNTILVLTSNLG QEILINNKEDVDGESVKKSITSVLQHHFRPEFLNRLDEIIVFHRLTKEHIEKIIDVQFSLLQKIVAQKELEISLSSEAKS WLMNNGYDSLYGARPLKRLIQQKIQNSLAKLILANQVSKGDKLEVVLLNDDLIINKL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-167 | 43 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 3e-100 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 6e-105 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 4e-105 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_507187.1 | ATP-dependent Clp protease, ATP-binding subunit ClpB | VFG2076 | Protein | 6e-112 | 41 |
