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Name : serS (NSE_0569) Accession : YP_506450.1 Strain : Neorickettsia sennetsu Miyayama Genome accession: NC_007798 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 493675 - 494922 bp Length : 1248 bp Strand : - Note : identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 DNA sequence : ATGAATGATCTCGAATATATAGTCTCTAATCCAGAAGGGTTCACTGAGATGATGAAGAGGCGAGGTGTAAGGTTTGATCC TCTGCCTCTAATTACACTGTATGAAGAACGAAAAAGTTGCGTTACTTCACTCAATAATCTTCAAGCGAGCAAAAATGAAT TGACCAGATCTTTTCAGGTTATTCAGGAGAACAAAAGTGAGCTTTTTGAAAAAGCCAAAGTGATAGATAAGGAGATTTTA AGAGTTAAGAAGCATCTCCAAAAAATTTGTGAGCAGCTTGAGTTAATTGTGTTAGATTTACCTAACATCTTAGCTGAGGA TGTCCCAATAGGTGAAGATGAGAGATCTAACGTTGTAGTAAAGTCGTGGGGTGCAGTTAGGGATTTTGGGTTTGAACCTA AAGCCCATGATGAACTTGGTGTCGCTCTTGGTATATTGGATTTTTTAAATGTTGCTAAGGTTTCAGGGGCGAGATTTTCG GGATTCATTGGCAGTGGGGCAAGGCTGTTTAGAGTGCTCAAAGATTTCATGCTTGAGCATAATACGGAGCATGGTCACCG TGAATATTTTCTACCGTACCTGGTGAAAGAAGATGCCATGTATAAAGCTGGGCAGTTACCGAAGTTTTCTCAAGAGTCAT TTAAAGTGGATGGCGGAATGCGCTTGGTTCCGACAAGTGAAGTTTCTCTGCTAAACTTTGTGTCTGATAATTTCTATGGG GAGACTGAGCTACCACTTAGGATGACCTCCTACAGTGAATGTTTCCGTTCTGAGGCGGGGAGCAGCGGTAAGGATACTAA AGGCATAATAAGGCAACATCAGTTCGGCAAGGTCGAGCTTTTGTCGGTAACGGAGCCGGAAAAATCGGATGATGAACTCG AGCGAATGTTGTGTATAGCTGAGGGTTTATTACAGAAGCTGAAGCTGCCATACCGAGTTGTTAATTTATGTTCGGGTGAT ATTGGTTTCTGTTCAAAAAAAACATATGACATAGAAGTGTGGATTCCGTCTCAATGCTGTTATAGAGAGATTTCTAGTTG CTCTAACTGCGGAGATTTTCAGTCTAGAAGGTTAGCGATCAAGTATAAATTCAAGAAAAAAAAGGGCTTTTTGCATACAC TGAACGCGAGCTCTCTTGCTATTGGTAGAACTATTGTTGCAATTTTGGAGAATTATCAGATGCATGATGGTTCTATTGAA GTTCCAGAAGTCTTGAGAAGTAGGTTCGGTGCTGATTTTATCAAGTAA Protein sequence : MNDLEYIVSNPEGFTEMMKRRGVRFDPLPLITLYEERKSCVTSLNNLQASKNELTRSFQVIQENKSELFEKAKVIDKEIL RVKKHLQKICEQLELIVLDLPNILAEDVPIGEDERSNVVVKSWGAVRDFGFEPKAHDELGVALGILDFLNVAKVSGARFS GFIGSGARLFRVLKDFMLEHNTEHGHREYFLPYLVKEDAMYKAGQLPKFSQESFKVDGGMRLVPTSEVSLLNFVSDNFYG ETELPLRMTSYSECFRSEAGSSGKDTKGIIRQHQFGKVELLSVTEPEKSDDELERMLCIAEGLLQKLKLPYRVVNLCSGD IGFCSKKTYDIEVWIPSQCCYREISSCSNCGDFQSRRLAIKYKFKKKKGFLHTLNASSLAIGRTIVAILENYQMHDGSIE VPEVLRSRFGADFIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-79 | 45 |
