Gene Information

Name : Saro_3150 (Saro_3150)
Accession : YP_498419.1
Strain : Novosphingobium aromaticivorans DSM 12444
Genome accession: NC_007794
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 3361673 - 3362998 bp
Length : 1326 bp
Strand : +
Note : -

DNA sequence : 
GTGACCGTACAGTTCCCGTCGATCAACGCCGCTCCGCTGAAGGGCCTCGACCCGCTGGTCTGCGCGACCACCCGCGTCAC
CGTGCTAGGTCTCGGCTATGTCGGCCTGCCGCTGGCCGTAGCGCTGGCCAAGCGATTCTTCGTCACCGGCTTCGACATCG
ACGTCGAACGCATTTCCGAGCTGTCCGAAGGCCACGACCGCACCCGCGAGATCGAACCCGCGCTGCTGTCGATGTCGAGC
CTGGGCCTTACCTGCGATGCCGGGGTCTGTCCGCCAAGCGATTTCTACATCGTCACCGTGCCCACCCCTATCGACGCCGC
CAACCGCCCCAACCTGCGCCTGGTCGAGGCCGCTTCGCGCACGGTCGGCCAGATGCTTCCCCGGGCCGTGGCCGAAGGCC
GCCAGCCCATCGTCGTCTACGAAAGCACCGTCTATCCCGGCGTCACCGAGGACATCTGCGGCCCGATCCTCGAGCAGGTC
TCCGGCCTCAGGTGCGGCACGGACTTCTTCCTCGGCTACAGCCCGGAACGCATCAACCCGGGCGACCGCGAACACACCAT
CGAGCGGATAACCAAGGTCGTCTCGGGCCAGACACCCGAAGTGCTCGACCGCGTGGCCGACCTCTATGGCGCGATCACTT
CGGGCGGCGTCTTCCGCGCCGCCTCGATCAAGGCCGCCGAGGCCGCCAAGGTCATCGAGAACGCCCAGCGCGACATCAAC
ATCGCCTTCATGAACGAGATCACGCAAATCTTCTCGCGCATGGACCTTTCGGTCTGGGACGTGCTCGCGGCGGCGGGCAC
CAAATGGAACTTCCTGCCCTTCACCCCCGGCCTCGTCGGCGGACACTGCATCGGCGTCGATCCCTACTACCTCTCCGCGC
GCGCCGAAGCGCTGGGCCATGACCCGCAGGTGATCCTCGCCGGTCGCGGCGTGAACGACGGCATGGCGAAATGGGTCGCG
GGCGAGCTTCACGCGCGGCGCGGCGGCAAGCCCGGCTCGGTCCTCGTGCTGGGCCTGACGTTCAAGGAAAACGTGCCCGA
CCTGCGCAATTCCAAGGTGGCCGACGTCATCGCCGAACTGAAGGCCCTGGGCCATGCGGTCGACGTGCACGATCCCCACG
CCGATACCGCCGAGGCTCTGCTCGAATATGGCCTCGAACTCGCCGGCGACGCGTTCGAGCAGACCTACGATCTCGTGTTC
CTCGCCGTGCCGCACAAGTACTACCTGGCAGCAGGCGCGGACCGTATCGCTGCGCTCGTCGCGCCCGGCGGCACGCTGGC
CGATCTCAAGGGCGTCCTGGGCGAGGCCGCCGACTGGCGTCTCTGA

Protein sequence : 
MTVQFPSINAAPLKGLDPLVCATTRVTVLGLGYVGLPLAVALAKRFFVTGFDIDVERISELSEGHDRTREIEPALLSMSS
LGLTCDAGVCPPSDFYIVTVPTPIDAANRPNLRLVEAASRTVGQMLPRAVAEGRQPIVVYESTVYPGVTEDICGPILEQV
SGLRCGTDFFLGYSPERINPGDREHTIERITKVVSGQTPEVLDRVADLYGAITSGGVFRAASIKAAEAAKVIENAQRDIN
IAFMNEITQIFSRMDLSVWDVLAAAGTKWNFLPFTPGLVGGHCIGVDPYYLSARAEALGHDPQVILAGRGVNDGMAKWVA
GELHARRGGKPGSVLVLGLTFKENVPDLRNSKVADVIAELKALGHAVDVHDPHADTAEALLEYGLELAGDAFEQTYDLVF
LAVPHKYYLAAGADRIAALVAPGGTLADLKGVLGEAADWRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 1e-85 52
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 5e-73 46
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 5e-73 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Saro_3150 YP_498419.1 UDP-glucose/GDP-mannose dehydrogenase VFG0431 Protein 2e-73 46