Gene Information

Name : Saro_1979 (Saro_1979)
Accession : YP_497253.1
Strain : Novosphingobium aromaticivorans DSM 12444
Genome accession: NC_007794
Putative virulence/resistance : Resistance
Product : DEAD/DEAH box helicase-like protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1200
EC number : -
Position : 2096600 - 2098657 bp
Length : 2058 bp
Strand : -
Note : -

DNA sequence :
ATGCGTCCCGACCTGCTCAATCCACTGTTTGCCGAGGCCAGCAGCCTGAAGGGCGTTGGGCCTGGCCTCGCACGTCCTCT
GGAAAAGCTCGGCCTGACGCGGGTAAAGGATTTTGCCTACCACCTTCCCGATCGTTTCGTCCTGCGCCGCGCCATAGCGA
ATCTCGACGAGGCGAGCGTTGGCGAGCAGATCGTCGTTGCGCTCACACCTCGTGACTATCGTCAGTCCGCAGGCCGGGGG
CCGTTTCGCGTGATGGCTGAGGACGAAAGCGGCAGCTTCGTTGCACTGACCTATTTTGGCCGCGCTTCCTACACGGCCAA
GAAGCAGCTTCCGCTGGGCGAAAAACGATGGGTCGCCGGACGCCTCGATCAGTTCGGCCAGACCTGGCAAATCGTCCATC
CCGACCATGTGAGCGACGACAGCGCAGGGATGCTCGGCCAGTTGAACGAGCCTGTCTATCCGTTGTCCGAGGGGTTGACC
CAGGGGCGGTTGCAGGGGCTGGTGCACCAGTCGCTCGCACACTTGCCGCAGCTTCCAGAATGGATCGAGCCCGGTCTCGC
TCAGCGTATGGACTGGCCGGCATGGCATGAGGCGCTGCCCTTGGCGCACAAGGGCGAGCACAAGGCCGCGCGCGATCGGC
TCGCTTACGATGAATTGCTGGCCAACAGCCTTGCGCTCATCCTCGTGCGGGAAAGCAACCGCAGCCGGCAGGGCACTCCG
CTGCACGGAGATGGTCATCTCCGTGCGAAGCTGAACCTCCCGTTCGACCTTACCGGTGCCCAGAAGCGCTCCATCGCCGA
GATCGAGGGCGACGTGGCGCAAGGCGCGCCCATGTTGCGCCTTCTCCAGGGCGACGTGGGGTCGGGCAAGACCGCCGTGG
CGCTCAACGCCATGCTGATCGCGGTGGAATCGGGCGCGCAGGCGGCCCTGCTTGCACCAACCGAGATCCTGGCGCGCCAA
CACGCCGATACGCTGTCGAAGATGGCAGTGGGCACGGGGGTCAACATCGCTCTGCTGACCGGGCGGGACAAGGGCAGGGC
GCGCGAGTCCATTCTCATGGGCCTGCTCGACGGTAGCATCGACATCTGCGTGGGTACGCACGCGATCTTTCAGGAGGCAG
TTGCCTATCGCAATCTGGCGCTGGTGGTGATCGACGAACAGCATCGCTTCGGCGTGGGCCAGCGGCTGATGCTGACGCAG
AAGGCGCGGCGCACGCCCCATTGCCTTGCGATGACCGCCACGCCCATTCCGCGCACGCTGACGCTTGCGCAATATGGTGA
AATGGATGTCTCTCGCCTCGACGAGATGCCGCCCGGCCGACAGGCCATCGACACGAGAGTTGTCGCGCAGGAGCGGCTCG
CCGATGTGATAGAGGGGGTGGGCCGACACATCGCGAAGGGTGCCCAGGCGTACTGGGTCTGCCCCATGGTCCGCGAGCAG
GAGAACGACGATATGGCCGCAGCCGAGGCGCGCTTCGCAGCCTTGAAGGAGCGGTTCGGCGATATGGTCGTGATGGTGCA
CGGGCAGCTCCGGCCCGAGGTCAAGGATGCGGCGATGGAACGCTTCGCGCGCGGCGATGCGAAGCTGCTGGTGGCCACCA
CCGTAATCGAGGTTGGCGTCGACGTTCCGAATGCTACCTTGATGGTGATCGAGCAGGCGGAGCGTTTTGGCCTTGCCCAG
TTGCACCAGCTACGCGGCAGGGTCGGACGTGGCAGTCAGCAATCGACCTGTCTTCTTCTCCGGGGCGATGCGCTGTCCGA
GACCGGGCGCGAGAGGCTCGCCTTGATGAGGGAGACGCAGGACGGCTTTCGGCTTGCCGAAGAGGACTTGCGGCTGCGTG
GCGGCGGCGAACTTCTGGGGACGCGCCAGTCCGGCGAGACGCCGTTCAAGGTCGCGGATTTCGAACAGATCGCGAAGCTT
CTACCGCTGGCGCACGACGATGCCCGGCTCCTGATGGAGCGCGACGGCGGGCTTTCGTCCCCCCGCGGGCAGGCGGCGCG
CGTGTTGTTGTATCTGTTCGAACGCGACTGGGGCGTCCAGTTACTGCGCGGCGGTTAG

Protein sequence :
MRPDLLNPLFAEASSLKGVGPGLARPLEKLGLTRVKDFAYHLPDRFVLRRAIANLDEASVGEQIVVALTPRDYRQSAGRG
PFRVMAEDESGSFVALTYFGRASYTAKKQLPLGEKRWVAGRLDQFGQTWQIVHPDHVSDDSAGMLGQLNEPVYPLSEGLT
QGRLQGLVHQSLAHLPQLPEWIEPGLAQRMDWPAWHEALPLAHKGEHKAARDRLAYDELLANSLALILVRESNRSRQGTP
LHGDGHLRAKLNLPFDLTGAQKRSIAEIEGDVAQGAPMLRLLQGDVGSGKTAVALNAMLIAVESGAQAALLAPTEILARQ
HADTLSKMAVGTGVNIALLTGRDKGRARESILMGLLDGSIDICVGTHAIFQEAVAYRNLALVVIDEQHRFGVGQRLMLTQ
KARRTPHCLAMTATPIPRTLTLAQYGEMDVSRLDEMPPGRQAIDTRVVAQERLADVIEGVGRHIAKGAQAYWVCPMVREQ
ENDDMAAAEARFAALKERFGDMVVMVHGQLRPEVKDAAMERFARGDAKLLVATTVIEVGVDVPNATLMVIEQAERFGLAQ
LHQLRGRVGRGSQQSTCLLLRGDALSETGRERLALMRETQDGFRLAEEDLRLRGGGELLGTRQSGETPFKVADFEQIAKL
LPLAHDDARLLMERDGGLSSPRGQAARVLLYLFERDWGVQLLRGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
recG CAJ77039.1 ATP-dependent DNA helicase Not tested AbaR1 Protein 1e-132 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Saro_1979 YP_497253.1 DEAD/DEAH box helicase-like protein BAC0356 Protein 2e-95 45