Gene Information

Name : Saro_1599 (Saro_1599)
Accession : YP_496873.1
Strain : Novosphingobium aromaticivorans DSM 12444
Genome accession: NC_007794
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1662598 - 1663284 bp
Length : 687 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCCAGAAGATCCTGCTTGTTGAAGACGATGCCGACACCGCCGCGTTCATCGTCGGCGGCCTGGCCGAGGAGGGCTT
CGTGGTCGATCGCGCCCGCGATGGGCGAGAGGGTCTGTTCATGGGTACGGACCACACATATCAGTGCATCGTGCTCGACC
GGATGTTGCCGGGGTTGGACGGCATGGCGGTTCTGGCAGCGCTGCGCGGTGCCGGGGTGCACACGCCGGTCATCATCCTT
TCGGCCCTTGGTGCGACGGAAGATCGGATCACGGGCCTGACCCGGGGGGCGGACGACTATCTGGCCAAGCCCTTTGCCTT
TGCGGAACTGCTGGCGCGTATCCGGCTTCTGGTCCGGAGGGGCAGCGGGGCGCCGACCGAACAGACCAAGCTGTCCTGCG
GCGACCTTGAAATGGACCTGCTTTCGCGCCGCGTTCGACGCGGGGCGCGGGCAATCGACCTCCAGCCGCGCGAATTCCGC
CTGCTCGAGTTCCTGCTGCGCCATGCAGATCAGGTCGTGACCCGAACGATGCTTCTGGAAGGCGTCTGGGACTATCACTT
CGATCCAGGCACCAACGTGATCGACGTCCACATCAGTCGCCTGCGCAAGAAGATCGACGAGGGCGAGGTCGTCGCCTTGC
TTCACACCGTGCGGGGCGCCGGTTACCGCATCGGCACAGGTGCGTGA

Protein sequence : 
MSQKILLVEDDADTAAFIVGGLAEEGFVVDRARDGREGLFMGTDHTYQCIVLDRMLPGLDGMAVLAALRGAGVHTPVIIL
SALGATEDRITGLTRGADDYLAKPFAFAELLARIRLLVRRGSGAPTEQTKLSCGDLEMDLLSRRVRRGARAIDLQPREFR
LLEFLLRHADQVVTRTMLLEGVWDYHFDPGTNVIDVHISRLRKKIDEGEVVALLHTVRGAGYRIGTGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-38 47
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-37 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Saro_1599 YP_496873.1 two component transcriptional regulator BAC0347 Protein 5e-39 48
Saro_1599 YP_496873.1 two component transcriptional regulator BAC0083 Protein 2e-42 48
Saro_1599 YP_496873.1 two component transcriptional regulator BAC0125 Protein 3e-41 48
Saro_1599 YP_496873.1 two component transcriptional regulator BAC0111 Protein 4e-41 47
Saro_1599 YP_496873.1 two component transcriptional regulator BAC0638 Protein 2e-43 47
Saro_1599 YP_496873.1 two component transcriptional regulator BAC0197 Protein 3e-36 45
Saro_1599 YP_496873.1 two component transcriptional regulator BAC0308 Protein 1e-37 44
Saro_1599 YP_496873.1 two component transcriptional regulator HE999704.1.gene1528. Protein 5e-27 41
Saro_1599 YP_496873.1 two component transcriptional regulator AE000516.2.gene3505. Protein 5e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Saro_1599 YP_496873.1 two component transcriptional regulator VFG1389 Protein 4e-35 48
Saro_1599 YP_496873.1 two component transcriptional regulator VFG0596 Protein 2e-38 47
Saro_1599 YP_496873.1 two component transcriptional regulator VFG1390 Protein 6e-34 41