Gene Information

Name : RPB_3405 (RPB_3405)
Accession : YP_487012.1
Strain : Rhodopseudomonas palustris HaA2
Genome accession: NC_007778
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3891189 - 3892046 bp
Length : 858 bp
Strand : +
Note : -

DNA sequence : 
GTGAGCGAGCTGTTCGACTGGTTCGCCGGGCCGCTGGCCTATCCCTTCATGCAGCGCGCGCTGGTGATATCGGTGATGGT
CGCGGCGGTCTGCGCCGTGCTGTCCTGCTACCTGGTGCTCAAGGGCTGGTCGCTGATGGGCGACGCCGTCTCCCACGCGG
TGCTGCCCGGCATCGTGCTCGCCCATGTGCTGAACCTGCCCTACGCGATCGGCGCGTTCGCTGCCGGCCTGTCCTGCGCG
GTGTTCACCGGATATTTGACCGCGAACAGCCGGGTGAAGGAGGACACGGTGATGGGCATCGTGTTTTCCGGCATGTTCGG
CCTCGGCCTCGTGATGTTCACCAAGATCGAGACCGACCAGCATCTCAACCACATCCTGTTCGGAAACGTTCTCGGCGTCA
CGCCGCGCGACCTGATCGAAACGGCGATCGTCGCCGGCGGCACGCTGCTCGTCGTGCTGCTGAAAGGCCGCGATCTGCTG
CTCTACTGCTTCGATCCCAACCACGCCCGCTCGATCGGCCTGCCGGTCGTCTGGCTGCATTACGGGCTGCTGGTGCTGCT
CGCGCTGACCATCGTCGCGTCGCTGAAGGCGGTCGGGATCATCCTGGTCGTGGCGATGCTGGTCGCGCCCGGCGCTACCG
CCTATCTGCTGACCGACAGCTTCGACCGCATGCTGGTGATCGCCACCGTCGTCGCGACCAGCTCGGCCGCGCTCGGGACG
CTGATCAGCTTCCATATCGACGGCGCGACCGGCGCCTGCATCGTGCTGACCCAGGCGGTGGTCTTCGTGCTGGCGTTTCT
GTTTGCGCCGAAGCGGGGTCTGTTACGACAGGCCGGCGGAGTCGGCAGCCGCCCCTGA

Protein sequence : 
MSELFDWFAGPLAYPFMQRALVISVMVAAVCAVLSCYLVLKGWSLMGDAVSHAVLPGIVLAHVLNLPYAIGAFAAGLSCA
VFTGYLTANSRVKEDTVMGIVFSGMFGLGLVMFTKIETDQHLNHILFGNVLGVTPRDLIETAIVAGGTLLVVLLKGRDLL
LYCFDPNHARSIGLPVVWLHYGLLVLLALTIVASLKAVGIILVVAMLVAPGATAYLLTDSFDRMLVIATVVATSSAALGT
LISFHIDGATGACIVLTQAVVFVLAFLFAPKRGLLRQAGGVGSRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-57 55
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-57 55
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-57 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-57 54
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-57 54
sitC NP_461784.1 permease Virulence SPI-1 Protein 9e-48 45
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-48 45
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-48 45
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 7e-48 45
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-48 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPB_3405 YP_487012.1 hypothetical protein BAC0442 Protein 2e-75 67
RPB_3405 YP_487012.1 hypothetical protein BAC0352 Protein 2e-57 55
RPB_3405 YP_487012.1 hypothetical protein BAC0441 Protein 5e-43 46
RPB_3405 YP_487012.1 hypothetical protein BAC0351 Protein 4e-48 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPB_3405 YP_487012.1 hypothetical protein VFG0528 Protein 2e-57 55
RPB_3405 YP_487012.1 hypothetical protein VFG0527 Protein 4e-48 45