Gene Information

Name : RPB_3404 (RPB_3404)
Accession : YP_487011.1
Strain : Rhodopseudomonas palustris HaA2
Genome accession: NC_007778
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3890317 - 3891192 bp
Length : 876 bp
Strand : +
Note : -

DNA sequence : 
ATGGCCGACGGCTCGCTGTTCGCCGAGATGCTGGTGCCGTTCGGCTACGACTACATGCTCAAGGCGATGTGGGTCAGCGC
GCTGGTCGGCGGCGCCTGCGCCTTTCTGTCGGCCTATCTGATGCTGAAGGGCTGGTCGCTGATGGGCGACGCCCTGGCGC
ATTCGATCGTGCCCGGCGTCGCGGCCGCCTATATCATCGGCGCGCCGTTCGCGGTCGGCGCCTTCGTCGCCGGACTGCTC
GCCGCGGCCGGCATGCAGTTCGTCAAGCTGAACTCGCGCCTGCGCGAGGACGCGGTGATCGGACTGGTGTTCACCACGCT
GTTCGCGCTCGGCCTGCTGATGGCCTCGATCTGGCCCGCCTCGGTCAGCGTCCAGACCATCGTGCTCGGCAACATCCTCG
CGATCTCCGACGCGGACGTCGTGCAGGTGGCGGTGATCTCGGGGGTCTCGCTCGGCATCCTGGCGCTGCTGTGGAAGGAC
CTGATGGTGACGTTCTTCGACGAGAACCACGCGCGCAGCATCGGCCTCAATCCGCGCGCGCTCAGGATCGTGTTCTTCAC
CCTGCTCAGCGCCTGCACCGTGGCGGCGCTGCAGACGGTCGGCGCCTGCCTCGTCATCGCGATGGTGGTCACACCCGGCG
CCACCGCCTATCTCCTCACCGACCGCTTCGGCCGGCTGATCCTGATCAGCATCTCGATCGGCGCGATCACGAGCTTCGTC
GGCGCCTATCTCAGCTATTTCCTCGACGGCGCGACCGGCGGCGTGATCGTCACGCTGCAGACGCTGGTGTTCCTGACGGC
GTTCTATCTGGCGCCGAAGCACGGCCTGCTGGCGGCGCGCGGGCGCCGGCTCGCCGCCGCGGAGGCCGGGTCGTGA

Protein sequence : 
MADGSLFAEMLVPFGYDYMLKAMWVSALVGGACAFLSAYLMLKGWSLMGDALAHSIVPGVAAAYIIGAPFAVGAFVAGLL
AAAGMQFVKLNSRLREDAVIGLVFTTLFALGLLMASIWPASVSVQTIVLGNILAISDADVVQVAVISGVSLGILALLWKD
LMVTFFDENHARSIGLNPRALRIVFFTLLSACTVAALQTVGACLVIAMVVTPGATAYLLTDRFGRLILISISIGAITSFV
GAYLSYFLDGATGGVIVTLQTLVFLTAFYLAPKHGLLAARGRRLAAAEAGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-74 69
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-74 69
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-74 69
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-74 69
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-74 69
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-43 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-42 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-42 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-43 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-42 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPB_3404 YP_487011.1 hypothetical protein BAC0441 Protein 9e-77 71
RPB_3404 YP_487011.1 hypothetical protein BAC0351 Protein 1e-74 69
RPB_3404 YP_487011.1 hypothetical protein BAC0352 Protein 3e-43 43
RPB_3404 YP_487011.1 hypothetical protein BAC0442 Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPB_3404 YP_487011.1 hypothetical protein VFG0527 Protein 1e-74 69
RPB_3404 YP_487011.1 hypothetical protein VFG0528 Protein 2e-43 43