Gene Information

Name : RPB_3403 (RPB_3403)
Accession : YP_487010.1
Strain : Rhodopseudomonas palustris HaA2
Genome accession: NC_007778
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3889437 - 3890315 bp
Length : 879 bp
Strand : +
Note : -

DNA sequence :
ATGGCTAGAACGGAATTCAACGCGGCGCCCGCCAGCATCAGCGTGCAGAACCTCACCGTCACCTATCCGAACGGCTTCAC
CGCCGTGAAGGACGCGTCGTTCGCGCTCGACGCCGGCACGATCTGCGCCCTGGTCGGCGTCAACGGCAGCGGCAAGTCGA
CCATCTTCAAGGCGATCATGGGCTTCGTGCGGCCCACCTCCGGCGTGGTGAAACTCTGCGGTCTGCCGGTCGCGGAGGCG
CTGAAGAACAACATCGTCGCCTATGTGCCGCAGAGCGAGGACGTCGACTGGAACTTCCCGGTGCTGGTCGAAACCGTGGT
GATGATGGGCCGCTACGGCCACATGAACTTCCTGCGGATTCCGTCGCGCCTCGATCGCCGCAAGGTCGACGAGGCGCTGG
AGCGCGTCGGCATGAGCGACTACCGGCACCGCCAGATCGGCGAATTGAGCGGCGGCCAGAAGAAGCGTGTGTTCCTGGCC
CGCTCGCTGGCGCAGGGCGGCCGCATCATCCTGCTCGACGAGCCGTTCACCGGCGTCGACGTCAAGACCGAAGCCGCGAT
CATCGGGCTGTTGCGCGAGTTGCGGGACTCCGGCCATCTGATGCTGGTCTCGACCCACGACCTCGGCAGCATTCCGGAAT
TCTGCGACCAGGTCGTCCTGATCAACCGCTCCGTTCTCGCCGCCGGGCCGACCGCCGAGACCTTCACGCGCGACAATCTC
GAACGGACGTTCGGCGGCGTGCTGCGCAACCGGCAATTCGGCGGCACCGGGCCGGATCGCGACGACGACCGCGGGCAGTT
CACGGTGATCAGCGACGACGAACGGCCGCTCGTGCTGCTCGGCGAGCGCCGGAGCCAGCGCCAGGACGAGGAGACCTGA

Protein sequence :
MARTEFNAAPASISVQNLTVTYPNGFTAVKDASFALDAGTICALVGVNGSGKSTIFKAIMGFVRPTSGVVKLCGLPVAEA
LKNNIVAYVPQSEDVDWNFPVLVETVVMMGRYGHMNFLRIPSRLDRRKVDEALERVGMSDYRHRQIGELSGGQKKRVFLA
RSLAQGGRIILLDEPFTGVDVKTEAAIIGLLRELRDSGHLMLVSTHDLGSIPEFCDQVVLINRSVLAAGPTAETFTRDNL
ERTFGGVLRNRQFGGTGPDRDDDRGQFTVISDDERPLVLLGERRSQRQDEET

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-77 62
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-77 62
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 8e-78 62
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-78 62
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-78 62

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPB_3403 YP_487010.1 ABC transporter BAC0440 Protein 8e-88 65
RPB_3403 YP_487010.1 ABC transporter BAC0350 Protein 4e-78 62
RPB_3403 YP_487010.1 ABC transporter BAC0400 Protein 2e-45 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPB_3403 YP_487010.1 ABC transporter VFG0526 Protein 4e-78 62