Gene Information

Name : RPB_3402 (RPB_3402)
Accession : YP_487009.1
Strain : Rhodopseudomonas palustris HaA2
Genome accession: NC_007778
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3888501 - 3889418 bp
Length : 918 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGCCGAAAGCCGACCATCGACGCCTGGCCTGGACCGCCTTCGCGGGCGCCCTCGCCTGCCTGCTGCTGGCGGGCCC
CTCCCTGGCGGAAACGCGCAAGCCGTTCCGGGTGGTGACGACCTTCACCATCATCCAGGACATCGCGCAGAACGTCGCCG
GCGACAGGGCCGTGGTGGAATCGATCACCAAGCCGGGGGCTGAGATCCACGACTACCAGCCGACACCGCGCGACATCGTC
CGCGCGCAGTCGGCAGACCTCGTGCTGTGGAACGGATTCAACCTCGAACGCTGGTTCGAGCGGTTCTTCCAGAGCGTCAA
ACAGGTGCCGAGCGTGGTCGTCACCGAAGGCATCGCGCCGATGGGGATCGCCGACGGGCCCTATGCCGGCAAGCCGAACC
CGCACGCCTGGATGTCGCCGTCGAACGCGCTGATCTATGTCGAGAACATCCGCAAGGCGCTGGTCACCTACGATCCGTCC
AACAAGGACGCCTACGATCGCAACGCCGCCGACTATTCCGCGCGGATCAGGGCGCTCGACGAGCCGCTGCGCAAGCGGCT
CGCCGAAATTCCGAAGGACAAGCGCTGGCTGGTGTCGAGCGAAGGCGCTTTCAGCTATCTTGCGCGCGACTACGAGATGA
AGGAAGCTTTCCTCTGGCCGATCAACGCCGACGAACAGGGCACGCCGCAGCAGGTGCGCAAGGTGATCGACCTGGTGCGC
AACAACGACATCCCGGTGGTGTTCAGCGAAAGCACGATCTCGGACCGCGCCGCCAAGCAGGTGGCCCGCGAGGCCGGGGC
ACGCTACGGTGGGGTGCTCTATGTCGACTCGCTCAGCGCCGCGGGCGGCCCAGTCCCGACCTATCTGGACCTGCTGAAGG
TCACAGTGGAGACCATCGCGAAAGGGTTTGGCGCTTGA

Protein sequence : 
MKPKADHRRLAWTAFAGALACLLLAGPSLAETRKPFRVVTTFTIIQDIAQNVAGDRAVVESITKPGAEIHDYQPTPRDIV
RAQSADLVLWNGFNLERWFERFFQSVKQVPSVVVTEGIAPMGIADGPYAGKPNPHAWMSPSNALIYVENIRKALVTYDPS
NKDAYDRNAADYSARIRALDEPLRKRLAEIPKDKRWLVSSEGAFSYLARDYEMKEAFLWPINADEQGTPQQVRKVIDLVR
NNDIPVVFSESTISDRAAKQVAREAGARYGGVLYVDSLSAAGGPVPTYLDLLKVTVETIAKGFGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 6e-94 68
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 6e-94 68
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 6e-94 68
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-94 68
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 5e-94 68

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPB_3402 YP_487009.1 periplasmic solute binding protein BAC0439 Protein 5e-103 73
RPB_3402 YP_487009.1 periplasmic solute binding protein BAC0349 Protein 3e-94 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPB_3402 YP_487009.1 periplasmic solute binding protein VFG0525 Protein 3e-94 68