Gene Information

Name : RPB_2449 (RPB_2449)
Accession : YP_486065.1
Strain : Rhodopseudomonas palustris HaA2
Genome accession: NC_007778
Putative virulence/resistance : Resistance
Product : major facilitator transporter
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 2804705 - 2805979 bp
Length : 1275 bp
Strand : +
Note : -

DNA sequence :
ATGACCGCGGCCGGCCACGCGAGCGGGACGAGCGCGCCGGCACCCGGCGCGCGCCCCGCCGCGGTCGGCTTCATCTTCGT
CACCATCCTGCTCGACATGCTGAGCGTCGGCATGATCCTGCCGATCCTGCCGAAGCTGATCGAGAGCTTCTCCGACAACG
ACACCGCGGCTGCGGCCAAGATCTACGGCCTGTTCGGCACGGCCTGGGCGCTGATGCAGTTCGTCGCGTCGCCGGTGCTG
GGCGCGCTGTCTGATCGTTTCGGCCGCCGCCGGGTGATCCTGCTGTCCAATCTCGGTCTCGGGCTCGATTACATCCTGAT
GGCGCTGGCGCCGACGCTGGCCTGGCTGTTCATCGGCCGGGTGATCTCCGGCATCACCTCGGCGAGTATCTCAACCTCGT
TCGCCTATATCGCCGACGTCACACCTGCGGAAAAACGCGCGGCCGTGTTCGGCAAGGTCGGCGCCGCCTTCGGCCTCGGC
TTCATCTTCGGCCCGGCGATCGGCGGATTGCTCGGCGGCGTCGATCCGCGGCTGCCGTTCTGGGTGGCGGCCGGCTTGAG
CCTGTGCAACGCGCTGTATGGCTTGTTCGTGCTGCCGGAATCGCTGCCGCCGGAGCGGCGGTCGCCGTTCCGCTGGCGGG
CCGCCAATCCGATCGGCGCGGTGCAGTTGCTGTCGTCGAATGCGATACTCGCCGGTATGGCGATCGTGGCGTTCTGCGCC
GAGGTCGCCCATGTGGCGCTGTCCGCGACCTTCGTCCTCTACGCCAGCTATCGCTACGCGTGGGATCAGACCACGGTCGG
TCTCGCCTTGGCCTTCGTCGGCTTCTGCACTACCGTGGTGCAGGGCTTTCTCGTCGGCCCCGCGGTCAAGCGGCTCGGTG
AGCGGCGCGCCCAAGTGATCGGCTATCTCGGCGGCGCAGCGGGCTTTCTGATCTATGCGCTGGCGCCGACCGGCGCGCTG
TTCTGGATCGGCATTCCGGTGATGACGCTGTGGGGCATCGCTAAGCCGGCGACCGCCGGGGTGATGACGCGCCTGGTGGC
GCCGGCGCAGCAAGGACAATTGCAGGGCGCAACCACCAGCATGAACAGCATCGCGGCGCTGATCGGGCCTTTCCTGTTCA
CGGGCATCTTCGCCTATTTCATCGAGCCCGATGCGCCGATTTGGTTTCCCGGCGCGCCGTTCCTGCTCGCCGGCGCGCTG
CTGATGGTTTCGATGCTACTCGCAGGCATCTCGACGCCGCCGCAAAGCAAATCAGGCGCCGCAAGCGGCGCCTGA

Protein sequence :
MTAAGHASGTSAPAPGARPAAVGFIFVTILLDMLSVGMILPILPKLIESFSDNDTAAAAKIYGLFGTAWALMQFVASPVL
GALSDRFGRRRVILLSNLGLGLDYILMALAPTLAWLFIGRVISGITSASISTSFAYIADVTPAEKRAAVFGKVGAAFGLG
FIFGPAIGGLLGGVDPRLPFWVAAGLSLCNALYGLFVLPESLPPERRSPFRWRAANPIGAVQLLSSNAILAGMAIVAFCA
EVAHVALSATFVLYASYRYAWDQTTVGLALAFVGFCTTVVQGFLVGPAVKRLGERRAQVIGYLGGAAGFLIYALAPTGAL
FWIGIPVMTLWGIAKPATAGVMTRLVAPAQQGQLQGATTSMNSIAALIGPFLFTGIFAYFIEPDAPIWFPGAPFLLAGAL
LMVSMLLAGISTPPQSKSGAASGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 2e-39 42
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 2e-39 42
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 2e-39 42
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 2e-39 42
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 2e-39 42
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 1e-39 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPB_2449 YP_486065.1 major facilitator transporter NC_011586.7045189.p0 Protein 1e-36 42
RPB_2449 YP_486065.1 major facilitator transporter CP001485.1.gene2821. Protein 9e-40 42
RPB_2449 YP_486065.1 major facilitator transporter AF534183.gene.p01 Protein 9e-40 42
RPB_2449 YP_486065.1 major facilitator transporter NC_010410.6002597.p0 Protein 9e-40 42
RPB_2449 YP_486065.1 major facilitator transporter AF090987.gene.p01 Protein 4e-30 41
RPB_2449 YP_486065.1 major facilitator transporter AY264780.2.gene3.p01 Protein 1e-38 41
RPB_2449 YP_486065.1 major facilitator transporter X75761.gene.p01 Protein 5e-39 41