Gene Information

Name : RPB_1553 (RPB_1553)
Accession : YP_485174.1
Strain : Rhodopseudomonas palustris HaA2
Genome accession: NC_007778
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 1750581 - 1751852 bp
Length : 1272 bp
Strand : +
Note : -

DNA sequence : 
ATGCGGAAGATTGCGGTCGTCGGTCTCGGATATGTGGGCTTGCCAGTTGCTATTGGATTTGCCCGTTCGTACCAGGTGGT
CGGCTTCGATGTCGATCGCGTGCGGATCTCCGAGCTGAATGAAGGCTTCGACCGAACGCGCGAGGTCGAGCCGGACGCGC
TGCGCGGCGCCTCGATCAAGTTCACCAGTGTCGTCGCCGAATTGTCGGGATGCGATTTCTACATTGTGGCGGTCCCCACG
CCGCTCGATGACGCGCGTCGGCCCGACCTCGGTGCGATGTTGTCCGCCTCGCGCGCGGTGGGGTCGGTCCTGAAGAAAAA
CGATATCGTCGTCTACGAGTCGACCGTCTATCCGGGCGCAGTCGAAGAAGAGTGTCTTCCCGTTCTCGAGCAGGCGTCGG
GACTCCTGGCGGGAGTCGACTTCAAGGTCGGATACTCGCCGGAGCGGATCAATCCCGGCGACAAGAACCACAGGTTCGAA
ACCATCACCAAAGTCGTCTCGGCCCAGGACGCCGAATCTCTCGACATCGTCGCCGACGTCTATGGTTCGGTCGTCACCGC
CGGCATCTACCGGGCGCCCTCGATCAAGGTCGCGGAAGCCGCCAAGGTCATCGAGAATACTCAGCGCGACCTCAACATCG
CTTTCATGAACGAGCTGGCTCTGATCTTCCAGTCTCTGGAAATCGATACCGATGACGTTCTTGCGGCGGCGAGAACGAAA
TGGAATTTCCTGCCGTTTCAGCCCGGACTGGTGGGTGGACACTGCATCGGCGTGGACCCTTACTATCTGACCTTCCGGGC
GGAAAAAGCAGGCTATCATCCTGAAGTCATCCTGGCGGGTCGCCGGATCAACGACGCCATGGGAGCGGAGATTGCCCGTC
AGTGCATCCGCCGGATGATGCGGTGCCGATATCGGAGCGAAACCGTGACGATCCTCGGCCTGACGTTCAAGGAGAACGTT
CCCGACATCCGCAACACCAAAGTGGTGGACATCGTGCGTGAGCTGGAATCGTTCGGCGTTGCAGTTCAGATCTGCGATCC
TTGGGCGAACCCCGGCGACGCTTCGCGGGAGTACGGGATCGAGCCGGTCGATCTGGACAAGCTGCAGCCGGCCGACGCCG
TGATCGTTGCTGTTGCTCACGACGATTTTCTGCAACTCGGGTGGCCGCGGATCCAGACATTGCTTCACGGCGGCAAGGGC
ATCGTGTTCGACGTCAAGGCCAAATTGGATCGAAGCGCAAAGCCCGCCGATATCGAGCTGCTGCGGCTCTAA

Protein sequence : 
MRKIAVVGLGYVGLPVAIGFARSYQVVGFDVDRVRISELNEGFDRTREVEPDALRGASIKFTSVVAELSGCDFYIVAVPT
PLDDARRPDLGAMLSASRAVGSVLKKNDIVVYESTVYPGAVEEECLPVLEQASGLLAGVDFKVGYSPERINPGDKNHRFE
TITKVVSAQDAESLDIVADVYGSVVTAGIYRAPSIKVAEAAKVIENTQRDLNIAFMNELALIFQSLEIDTDDVLAAARTK
WNFLPFQPGLVGGHCIGVDPYYLTFRAEKAGYHPEVILAGRRINDAMGAEIARQCIRRMMRCRYRSETVTILGLTFKENV
PDIRNTKVVDIVRELESFGVAVQICDPWANPGDASREYGIEPVDLDKLQPADAVIVAVAHDDFLQLGWPRIQTLLHGGKG
IVFDVKAKLDRSAKPADIELLRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 4e-104 60
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-99 55
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-99 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPB_1553 YP_485174.1 UDP-glucose/GDP-mannose dehydrogenase VFG0431 Protein 9e-100 55