Gene Information

Name : RPB_1222 (RPB_1222)
Accession : YP_484843.1
Strain : Rhodopseudomonas palustris HaA2
Genome accession: NC_007778
Putative virulence/resistance : Unknown
Product : ABC transporter
Function : -
COG functional category : R : General function prediction only
COG ID : COG1123
EC number : -
Position : 1398031 - 1399692 bp
Length : 1662 bp
Strand : -
Note : -

DNA sequence :
ATGTCCGACATGACCGACAACGTTCTCGAAATCGACAATCTGGTCGTCCGGCTCGGCAAGAGCGGCGACGGTGACAAGGT
GATCGACGGCATCTCGCTGGCGGTGCGGCCCGGCGAGACGATGTGCCTGGTCGGCGAAAGCGGCTCCGGCAAATCGGTGA
CGTCGCTGGCCACCATGGGGCTACTGCCGAAGGGCGTGCTGCACGCCACCGGCGGCGAGATCCGGCTCGCCGGCGAGAAC
GTGCTCGCCGCCAGCGAGCGGCGGCTGCGCCAGTTGCGCGCCTCCAGGATGGCGATGATCTTTCAGGAGCCGATGACCGC
GCTCAATCCGGTTGTGCCGGTCGGCAAGCAGATCGACGAGGTGCTGCGCTTCCACACCGATCTCGGCGCCCGCGCGCGCC
GGCAGCGCATCCTCGACATGATGCAGCAGGTCCGCCTGCCGGAGGTCGAGCGGATCTTCGCGTCCTATCCGCACCGCCTC
TCCGGCGGCCAGCGCCAGCGCATCATGATCGCGATGGCGCTGGTGCTCGAACCCAAATTGCTGATCGCCGACGAGCCGAC
CACCGCACTCGACGTCACCACCCAGAAGCAGATCCTGACGCTGATCCGCGAATTGCAGCAGGCGCACGGCACCGCGGTGC
TGTTCATCACCCACGACATGGGCGTAGTCGCCGAGATCGCCGACCGCGTCGCGGTGATGCGCCACGGCCGGCTGGTCGAG
ACCGGCAAGCTCGACGCCGTGCTGCGGACGCCGACCATGGACTACACCCGCAATTTGCTGTCGGCGGTGCCGAGCCTGGT
GCCGCGGGCGCCGCGCGAGGCCACAAGGCTGCCGGTGGTGCTCGAAGCCAATGAACTCGGCAAGGTGTATCGCGAGCGTT
CCTTCCTCGGCGGTCGGCGCGAAGTCGTCGCGGCCAAGGACGTGACGCTGACGCTGCACAAGGGCCGCACGCTCGGCATC
GTCGGCGAAAGCGGCTCCGGCAAATCCACCGTGGCGCGCTGCATCGTTCGGCTGATCGATCCGACCTCGGGGGGCATCCG
CCTCGCCGGCCGCGAGATCTCCGATCTGTCGCGCCGGCTGCTGCGGCCGCACCGCAAGAAGATCCAGATCATCTTCCAGG
ACCCGTATCGCTCGCTCAATCCGCGCGTCAGCGTCGGCGAGAGCATAGCCGAGGGGCCGATCAATTACGGCGTGTCGCGC
GCCGACGCGATGGCCAAGGCGCGGCAATTGCTCGAACTGGTGCATCTGCCGGCCGACGCGATCTCGCGCTATCCGCACCA
GTTCTCCGGCGGCCAACGCCAGCGCATCGCGATCGCCCGCGCGCTGGCGCTCGATCCCGACGTGCTGGTGGCCGACGAGG
CGGTGTCGGCGCTCGACGTCTCGGTGCAGGCCCAGGTGCTCGACCTGCTCGACGAGATCCAGACCCGGCTCGGCATTGCG
CTGCTGTTCATCACCCACGATCTGCGCGTCGCCGCCCAAATCTGCGACGACGTCGCGGTGATGGAGAAGGGCGTCGTCGT
CGAGCAGGGCCCGGCCGCCGAGGTGCTGACCAATCCGAAGCAGGCCTATACGCGGCAATTGCTCGAAGCCGCGCCCGGCC
GCGGCTGGGATTTCGCCAATTTCCGCCCCGTGAGCGAGGCGCCGCAGGCGGTGGTGAACTAA

Protein sequence :
MSDMTDNVLEIDNLVVRLGKSGDGDKVIDGISLAVRPGETMCLVGESGSGKSVTSLATMGLLPKGVLHATGGEIRLAGEN
VLAASERRLRQLRASRMAMIFQEPMTALNPVVPVGKQIDEVLRFHTDLGARARRQRILDMMQQVRLPEVERIFASYPHRL
SGGQRQRIMIAMALVLEPKLLIADEPTTALDVTTQKQILTLIRELQQAHGTAVLFITHDMGVVAEIADRVAVMRHGRLVE
TGKLDAVLRTPTMDYTRNLLSAVPSLVPRAPREATRLPVVLEANELGKVYRERSFLGGRREVVAAKDVTLTLHKGRTLGI
VGESGSGKSTVARCIVRLIDPTSGGIRLAGREISDLSRRLLRPHRKKIQIIFQDPYRSLNPRVSVGESIAEGPINYGVSR
ADAMAKARQLLELVHLPADAISRYPHQFSGGQRQRIAIARALALDPDVLVADEAVSALDVSVQAQVLDLLDEIQTRLGIA
LLFITHDLRVAAQICDDVAVMEKGVVVEQGPAAEVLTNPKQAYTRQLLEAAPGRGWDFANFRPVSEAPQAVVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 2e-76 44
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 2e-76 44
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 2e-76 44
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 2e-76 44
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 1e-93 43