Gene Information

Name : RPB_1038 (RPB_1038)
Accession : YP_484659.1
Strain : Rhodopseudomonas palustris HaA2
Genome accession: NC_007778
Putative virulence/resistance : Unknown
Product : ABC transporter
Function : -
COG functional category : R : General function prediction only
COG ID : COG1123
EC number : -
Position : 1192660 - 1194297 bp
Length : 1638 bp
Strand : -
Note : -

DNA sequence :
ATGACGGAGACCAAAGCCGCCGTCCTGACGCTCGACCGGCTCAACGTCCGCTTGCCCAAGGGTGCCGACAGGACGCACGC
CGTGCGCGACGCGTCGCTCACGATCGCCGCCGATGAAATCCTCTGCGTCGTCGGCGAGTCCGGCTCCGGCAAGTCGATCA
TGGCCAACGCGGTGATGCGGCTGTTGCCGGGCGGCGTCGCGCTCGACGGCGGCCGCGTGCTGTTCGAGGGCCGCGATCTG
GCGCAGGCCAGCGCCGCCGAGATGCGCGCCGTGCGCGGCGCCGGCATCGCCATGGTGTTTCAGGAGCCGATGACGGCGCT
CAACCCGCTGCGCTCGATCGGCGACCAGATCGGCGAGATGTTCCGCATTCACACCGACCTGTCGAAGAAGGACATCCGCG
CCAAGGTGCTGGCGCTGCTCGAGGACGTGCGGATTCCCGATCCGGCGCGCGCCGCCGACGCCTATCCGCACGAACTCTCA
GGCGGGCAACGCCAGCGCGCGATGATCGCGATGGCGCTGGCGCTCGACCCGAAGCTGTTGATCGCCGACGAACCGACCAC
CGCGCTCGACGTCACCACGCAGGCGCAGATCCTGACGCTGATCCGCGAGTTGCAGCATCGCCGCAACACCGCGGTGCTGT
TCATCACCCATGATTTCGGCGTGGTCGCCGAAATCGCCGATCGCGTCGCGGTGATGCAGCACGGAATCATCGTCGAGCAG
GGCACCGCCGACGACGTGCTGCACCGGCCGCAGCATCCCTATACGCGGCAACTGATCGCCGCGGTACCGCCTCTGACCGC
GCCGCCGCCGCGGCCGATCGCGGCCGAGACTATTCTGGGCATCGACAAGGTCTCGAAGACATTTCGCACCGGCGGCTTTC
TCGGCCGCGGCGCGCGCGTCACCCACGCCGTGAAATCAGTGTCGCTGCAATTGCCGCGCGGCGCGACGCTCGGCATCGTC
GGCGAATCCGGCTCCGGCAAGTCGACGCTGGCGCGCTGCATCATCCGGCTGCTCGACCCCGATTGCGGCTCGATTCTGCT
CGACGGCCGCGACTGGGCGACGATGCCGCGCGAAGACGTACGTCGCGAGACCCGCCACATGCAGATGGTGTTTCAGGACC
CGTTCGCCTCGCTCAACCCGCGCCACAAGGCCGAGGAATTAGTTGCGCAGGGCCCGATCATTCACGGCACGCCGCGCAAG
CAGGCGATCGCCGAGGCGCGCGAGCTGTTCGCGCTGGTCGGGCTCGATCCCGCCGCCGGCGACCGGCTGCCGCACGAATT
CTCCGGCGGCCAGCGCCAGCGCATCGGGCTGGCCCGCGCATTGGCGCTGAAGCCCGACGTGCTGATCGCCGACGAGGCGG
TGTCGGCGCTCGACGTCTCGGTGCAGGCGCAGGTGCTGCGGCTGCTCGCCGATCTGCGCGAGCGGCTCTGCCTGTCGATC
GTCTTCATCACCCACGATCTGCGCGTCGCCGCGCAGATCTGCGACCTCGTCGCTGTGATGAAGGACGGCGAAGTCGTCGA
ACACGGCCCCGCCGGCGAGGTCTTCAACGCGCCGAAGCATCCCTACACGCAGGCGCTGCTGGCCTCGATCCCGGGCGGCG
ATTTCGCGCGGAGCCATCCGGTGGAAGCGGTGGTGTAG

Protein sequence :
MTETKAAVLTLDRLNVRLPKGADRTHAVRDASLTIAADEILCVVGESGSGKSIMANAVMRLLPGGVALDGGRVLFEGRDL
AQASAAEMRAVRGAGIAMVFQEPMTALNPLRSIGDQIGEMFRIHTDLSKKDIRAKVLALLEDVRIPDPARAADAYPHELS
GGQRQRAMIAMALALDPKLLIADEPTTALDVTTQAQILTLIRELQHRRNTAVLFITHDFGVVAEIADRVAVMQHGIIVEQ
GTADDVLHRPQHPYTRQLIAAVPPLTAPPPRPIAAETILGIDKVSKTFRTGGFLGRGARVTHAVKSVSLQLPRGATLGIV
GESGSGKSTLARCIIRLLDPDCGSILLDGRDWATMPREDVRRETRHMQMVFQDPFASLNPRHKAEELVAQGPIIHGTPRK
QAIAEARELFALVGLDPAAGDRLPHEFSGGQRQRIGLARALALKPDVLIADEAVSALDVSVQAQVLRLLADLRERLCLSI
VFITHDLRVAAQICDLVAVMKDGEVVEHGPAGEVFNAPKHPYTQALLASIPGGDFARSHPVEAVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 7e-78 44
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 7e-78 44
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 7e-78 44
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 7e-78 44
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 6e-97 43