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Name : clpC (CYB_0607) Accession : YP_476859.1 Strain : Synechococcus sp. JA-2-3B'a(2-13) Genome accession: NC_007776 Putative virulence/resistance : Virulence Product : Clp protease, ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 617632 - 620106 bp Length : 2475 bp Strand : + Note : identified by similarity to SP:P37571; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724 DNA sequence : ATGTTTGAACGCTTTACAGAAAAAGCCATCAAGGTGATCATGCTGGCCCAAGAAGAAGCCAGACGGTTAGGTCACAATTT CGTTGGCACCGAGCAAATTTTGTTGGGGTTAATCGGCGAGGGCACTGGGGTCGCCGCCAAAGTTCTCAAGTCCATGGGAG TGAACTTGAAGGACGCCCGCATTGAAGTCGAGAAAATCATCGGTCGGGGATCCGGTTTTGTGGCCGTCGAGATCCCTTTC ACTCCCCGCGCCAAGCGAGTGCTGGAACTCTCCCTAGAAGAGGCCCGCCAGCTCGGCCACAACTACATCGGCACTGAGCA CCTGCTCCTGGGACTAATCCGAGAAGGGGAAGGGGTGGCAGCCCGCGTTTTGGAAAACCTGGGGGTGGATCTGTCCAAGG TGCGCACCCAGGTGATCCGCATGTTGGGCGAGACTGCCGAAGTGACGGCAGGGGGGGGATCCTCCAGCCGCACCAAAACG CCCACCCTGGACGAATTCGGCTCCAACCTCACCCAACTGGCCCAGGAGGGCAAGCTGGATCCGGTGGTCGGTCGGACGCG GGAGATCGAGCGGGTGATCCAGATCTTGGGCCGCCGCACCAAGAACAACCCCGTCCTCATTGGCGAGCCGGGGGTAGGCA AAACCGCCATCGCCGAGGGTTTGGCCCAGCGCATCGTGCAGGGGGATGTGCCGGATATTTTGGCCGACAAGCGGGTGATC AGCCTGGATATTGGTTTGCTGGTGGCCGGCACCAAGTACCGCGGCGAGTTTGAAGAGCGCCTCAAGAAAATCATGGATGA GATCCGCAATGCCGGCAACATCATCCTGGTCATCGACGAGGTGCATACCCTGATCGGGGCCGGGGCTGCGGAAGGGGCGA TTGATGCCGCCAACATCCTCAAGCCTGCTTTGGCCCGCGGCGAGCTGCAGTGCATCGGCGCCACCACCCTGGATGAGTAC CGCAAGCACATCGAGCGGGATGCTGCTCTGGAGCGCCGCTTCCAGCCCATCATGGTGGGCGAGCCGACGGTCTCCGAGAC CATCGAGATCCTGTTTGGCTTGCGGGAGCGCTACGAGCAGCACCACAAGCTGAAGATCTCCGATGCCGCCTTGGATGCGG CAGCCAAGCTGGCCGACCAGTACATCTCCGACCGGTTCTTGCCAGATAAGGCCATCGATTTGATCGACGAGGCTGCTTCG CGGGTGCGCCTGATCAACTCTCAACTGCCCCCGGCGGCCCGGGAGCTGGATCAAGAGTTGCGGCGAGTGCTCAAGGAGAA AGACGCTGCGGTGCGGGCCCAGAACTTCGACAAGGCTGGTGAGCTGCGGGATCGGGAGATGGAGATCAAGCAGCAGATCC GCGCCATTGCCGCTGCCAAAAAAGCCGAGGAGAGCAGCCGCAGCGAAATGCCTGAGGTAACCGAAGAGGACGTGGCCCAA GTGGTCAGCGCCTGGACGGGGGTGCCGGTGGCCAAGCTGACCGAGAGCGAGTCAGTGAAGCTGCTGAACATGGAAGAAAC CCTGCACCAGCGCATCATCGGCCAAGACGAAGCGGTGCGGGCCATCTCCCGGGCCATCCGCCGCGCTCGGGTGGGGCTGA AAAATCCCAACCGCCCCATCGCCAGCTTCATCTTCTCCGGCCCAACAGGGGTGGGCAAAACCGAGCTGACCAAGGCTTTG GCAGCCTACTTCTTCGGCTCCGAGTCGGCCATGATCCGCCTCGACATGTCGGAATACATGGAGCGGCACACGGTCAGCAA GCTGATCGGATCCCCGCCGGGCTATGTGGGCTACAACGAGGGGGGTCAGCTCACAGAAGCGGTGCGGCGTCGCCCCTACA CGGTGGTGCTTTTCGATGAGATCGAGAAGGCGCACCCGGATGTGTTTAACCTATTGCTGCAAATCCTGGAGGATGGCCGC CTGACCGATGCCAAAGGCCGCACGGTGGACTTCAAGAACACCCTGATCGTGATGACCTCTAACATCGGCTCGAAGGTCAT CGAGAAGGGCGGCGGTAGCCTCGGCTTCGAGTTCAACACCAACGACGAGGATGCCAACTACAACCGCATCCGCAACCTGG TGAACGAGGAGCTGAAGCAGTACTTCCGTCCGGAGTTCCTCAACCGCGTGGACGAGATCATCGTCTTCCGGCAACTGACC AAGGATGAGGTGAAGCAGATTGCCGACATCCTGCTCAAGGAAGTGTTTGACCGCATGACGGAGAAGAAAATCCGCCTTAC GGTCAGCGACCGCTTCAAAGACTTGGTGGTGGAGGAGGGGTATAACCCCAGCTACGGGGCACGCCCGCTGCGCCGCGCCA TCCAACGCCTGCTGGAAGACATCCTGGCGGAAGAGATCCTGACTGGGCATGTCCGGGAGGGATCGGAGGTGCTCATCGAT GTGGATGAGGAGCGCAAGCCCAAGGTGCTGGTCACGGAGCCGGAGCGGGTTCTCTTGCCTCAAGGGGCGGAGTAA Protein sequence : MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVTAGGGSSSRTKT PTLDEFGSNLTQLAQEGKLDPVVGRTREIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIVQGDVPDILADKRVI SLDIGLLVAGTKYRGEFEERLKKIMDEIRNAGNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEY RKHIERDAALERRFQPIMVGEPTVSETIEILFGLRERYEQHHKLKISDAALDAAAKLADQYISDRFLPDKAIDLIDEAAS RVRLINSQLPPAARELDQELRRVLKEKDAAVRAQNFDKAGELRDREMEIKQQIRAIAAAKKAEESSRSEMPEVTEEDVAQ VVSAWTGVPVAKLTESESVKLLNMEETLHQRIIGQDEAVRAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAL AAYFFGSESAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNLLLQILEDGR LTDAKGRTVDFKNTLIVMTSNIGSKVIEKGGGSLGFEFNTNDEDANYNRIRNLVNEELKQYFRPEFLNRVDEIIVFRQLT KDEVKQIADILLKEVFDRMTEKKIRLTVSDRFKDLVVEEGYNPSYGARPLRRAIQRLLEDILAEEILTGHVREGSEVLID VDEERKPKVLVTEPERVLLPQGAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_476859.1 | Clp protease, ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 60 |
| clpC | YP_476859.1 | Clp protease, ATP-binding subunit ClpC | VFG0080 | Protein | 6e-140 | 51 |
