Gene Information

Name : CYB_2856 (CYB_2856)
Accession : YP_479038.1
Strain : Synechococcus sp. JA-2-3B'a(2-13)
Genome accession: NC_007776
Putative virulence/resistance : Resistance
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2952637 - 2953380 bp
Length : 744 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGGAAGCAACCCTCTCCATGACTGGTTCACTTCCTCAAGCCAAGGAAGCTGCTCCCCATCTGGAGACCCTGCTGGTGGT
GGATGACGAGGATGCCATTCGGGAAACGGTTGCCCTGGCTTTAGAAGAGCAGGGGTATCAGGTTTTACAAGCCGCTGATG
GTCGGCAAGCCCTTGAGATGGTGCATACGGTTGAGCGGCTGGATTTGATGATCTTGGATTTGATGTTGCCCAGCTTGAAC
GGTCTGGATCTGTGCAGGCTGCTGCGCAGGGAGGGCAACACGATTCCCATCTTGATGTTGACGGCCAAAAGTAGCGAAAC
CGACCGCGTGGTGGGCTTGGAACTGGGGGCCGACGATTATCTGACCAAGCCCTTCGGCATGCGGGAGCTGATCGCCCGCT
GTCGCTCGGTGTTGCGCCGGCAACAACTGGCCCAAGCCAGCGATGCCACGGTGCTCCGTTACGGGGATCTGTGTATGTTT
ACCCAGGAGTGCCGCGTGTTGGTGCGGGGCGTTGAGGTGAGTTTTTCCCCCAAGGAATTTCGCCTGTTGGAGCTGTTTAT
GTCCAATCCCCGCCGCGTTTGGACGCGGGAACAGCTTCTGGAGCGCATCTGGGGATCCGACTTCATGGGCGACAGCAAGA
CCGTCGATGTACATATCCGCTGGCTGCGGGAAAAATTGGAGCTGGATCCCAGTAACCCAGAGTATTTGGTGACGGTGCGC
GGCTTCGGCTATCGCTTCGGCTAG

Protein sequence : 
MEATLSMTGSLPQAKEAAPHLETLLVVDDEDAIRETVALALEEQGYQVLQAADGRQALEMVHTVERLDLMILDLMLPSLN
GLDLCRLLRREGNTIPILMLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRQQLAQASDATVLRYGDLCMF
TQECRVLVRGVEVSFSPKEFRLLELFMSNPRRVWTREQLLERIWGSDFMGDSKTVDVHIRWLREKLELDPSNPEYLVTVR
GFGYRFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanRB YP_008394254.1 DNA-binding response regulator VanRB Not tested Not named Protein 3e-29 42
vanRB NP_815956.1 DNA-binding response regulator VanRB Not tested Not named Protein 3e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CYB_2856 YP_479038.1 DNA-binding response regulator AE016830.1.gene1681. Protein 4e-51 47
CYB_2856 YP_479038.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 2e-42 46
CYB_2856 YP_479038.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 1e-42 46
CYB_2856 YP_479038.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 1e-42 46
CYB_2856 YP_479038.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 1e-42 46
CYB_2856 YP_479038.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 1e-42 46
CYB_2856 YP_479038.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 1e-42 46
CYB_2856 YP_479038.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 1e-42 46
CYB_2856 YP_479038.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 1e-42 46
CYB_2856 YP_479038.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 1e-42 46
CYB_2856 YP_479038.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 1e-42 46
CYB_2856 YP_479038.1 DNA-binding response regulator NC_012469.1.7685629. Protein 4e-44 45
CYB_2856 YP_479038.1 DNA-binding response regulator NC_012469.1.7686381. Protein 1e-43 45
CYB_2856 YP_479038.1 DNA-binding response regulator HE999704.1.gene2815. Protein 4e-50 44
CYB_2856 YP_479038.1 DNA-binding response regulator AE000516.2.gene3505. Protein 2e-36 43
CYB_2856 YP_479038.1 DNA-binding response regulator AF310956.2.orf0.gene Protein 1e-29 42
CYB_2856 YP_479038.1 DNA-binding response regulator AE016830.1.gene2255. Protein 2e-29 42
CYB_2856 YP_479038.1 DNA-binding response regulator U35369.1.gene1.p01 Protein 2e-29 42
CYB_2856 YP_479038.1 DNA-binding response regulator CP000034.1.gene3671. Protein 1e-38 42
CYB_2856 YP_479038.1 DNA-binding response regulator HE999704.1.gene1528. Protein 9e-32 41
CYB_2856 YP_479038.1 DNA-binding response regulator BAC0197 Protein 3e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CYB_2856 YP_479038.1 DNA-binding response regulator VFG1390 Protein 6e-42 45
CYB_2856 YP_479038.1 DNA-binding response regulator VFG1389 Protein 5e-31 42