Gene Information

Name : CYB_2728 (CYB_2728)
Accession : YP_478916.1
Strain : Synechococcus sp. JA-2-3B'a(2-13)
Genome accession: NC_007776
Putative virulence/resistance : Virulence
Product : iron ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2821324 - 2822157 bp
Length : 834 bp
Strand : -
Note : identified by similarity to SP:P49938; match to protein family HMM PF00005

DNA sequence : 
ATGAGAGAGCCCATCCTGCAGGTCGAGGACTTGAGCGGGGGCTACGGATCCCGGACGGTGGTGCGACAGGTGAGCTTCAG
CGTGCAACAGGGGGAATGGCTGAGCATTGTCGGCCCCAATGGTTCCGGCAAATCGACGGTGCTGCGACTGTTGAGTCGGG
TTCTGATTCCCCAAGCTGGGCGCGTGTACTTGGGCGGTCGGGATCTGCACGCTCAACTCACTCCAAAGCAGGTGGCCCGG
CAGTTGGCTCTTTTGCCCCAGCAGCAGCGGCTCCCGGCAGGGCTAACGGTGCGGCAATTGGTGAGTCTGGGGCGTTCTCC
CCACCAGCCCTGGTGGGCGTGGCAGTTGACGCCGGCGGATCGGCAGCGGGTGGAGTGGGCTCTGGAGCAAGCAGGACTGG
GATCCCTGGCGCTGCGGCGGGTGGAAACCCTCTCGGGGGGAGAGCGGCAACGGGCTTTTCTGGCGCTGGCTTTGGTGCAG
GAGCCGCAGGTGTTGCTGTTGGATGAGCCCACCACCTTTTTGGATCTGCGCCACCAACTGGAGCTGCTGGAGCTGTTGCA
ACGGCTGAAGCAGGAGCAGGGCCTGACGGTAGTTACGGTGCTGCACGACCTGAATTTGGCCATTCGCTACAGCGAGCAGA
TTGCCTTGCTGGGATCCGGCCAGATGCAGGCCCTGGGGTCTCCCTTGGCGGTGTTGACCCCCAGCCGGGTGCGACAGGTG
TTTGGCCTGGAGGTGGAGTGGATCTCGACTCCGGTAGGGCCACAGCTTTGCCCCCTGCGCAGCACAGCTCCAGCGGCAGC
AAGGCTCCTCTCCCTGCCGGTGTCAGGGTGCTGA

Protein sequence : 
MREPILQVEDLSGGYGSRTVVRQVSFSVQQGEWLSIVGPNGSGKSTVLRLLSRVLIPQAGRVYLGGRDLHAQLTPKQVAR
QLALLPQQQRLPAGLTVRQLVSLGRSPHQPWWAWQLTPADRQRVEWALEQAGLGSLALRRVETLSGGERQRAFLALALVQ
EPQVLLLDEPTTFLDLRHQLELLELLQRLKQEQGLTVVTVLHDLNLAIRYSEQIALLGSGQMQALGSPLAVLTPSRVRQV
FGLEVEWISTPVGPQLCPLRSTAPAAARLLSLPVSGC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-37 45
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-31 44
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-29 42
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-29 42
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-29 42
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-29 42
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 3e-19 41
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 3e-19 41
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 4e-19 41
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 3e-19 41
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 7e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CYB_2728 YP_478916.1 iron ABC transporter ATP-binding protein BAC0164 Protein 2e-37 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CYB_2728 YP_478916.1 iron ABC transporter ATP-binding protein VFG1042 Protein 2e-37 45
CYB_2728 YP_478916.1 iron ABC transporter ATP-binding protein VFG0925 Protein 2e-29 43