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Name : CYB_0248 (CYB_0248) Accession : YP_476509.1 Strain : Synechococcus sp. JA-2-3B'a(2-13) Genome accession: NC_007776 Putative virulence/resistance : Unknown Product : peptide/nickel/opine uptake ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG1123 EC number : - Position : 262491 - 264302 bp Length : 1812 bp Strand : + Note : identified by match to protein family HMM PF00005 DNA sequence : ATGACTGAGGCTGTCTCTACTGCCGATTCTGCCTTGCTGACCGTACAAGGGCTGCGGGTTTTCTTGCCCAGCCGTGCAGC TGGCGAGCCCTCGGGATCCCCGGTGGTGGACGGGCTGTCTTTCCAGATCGGGATCGGCCAGACCTTAGGCCTGGTGGGGG AGTCGGGATCCGGCAAAACCATGACCGCCCTGACGCTGATTGATCTGCTGCCCAGCTCGGCCCGGGTGGAGGGCAAAATC CTCTTCAAGGGCCCTGACGGAACGGTGGACTGGCTGCAGTTGGATCCCCGGCAACGGCGGCGCTATCGCGGATCCCAGAT CGCCATGATTTTCCAGGAGCCGAGCACCGCCCTCAACCCCCTCTACACCTGTGGCCAGCAGTTACAGGAAACCTTGAGGG CCAACACCTCCCTGAGCCCGGCGGAGATCCGCGCCCAAGCCATTCGCCTGTTTGAGGAGGTGCAGCTTTCTCCCCAGATG CTGGAGCGCTATCCTCATCAGCTCTCCGGCGGCCAAATCCAGCGGGCGGCCATTGCCTGTGCCATCGCCTCCAATCCCCA ACTGTTGATTGCCGATGAGCCGACCACCGCTCTAGATGTTACGGTGCAAGCGGAAATCCTGCGCCTGCTCTGGGAGCTGC AGCAGCACCGGCAGATGGCCATCCTCTTCATCACCCACGATCTCAATTTGGTGGCCGAACTGGCAGATCAGGTGGTGGTG ATGCGCCGGGGCCAAGCTGTGGAACAGGGATCGGTGGAGCAGATCTTTCGGGATCCCCAGCATCCCTACACCCGCGGCCT GTTGGCCTGTCGCCCGGTGTTGGAGCGGCGGTTGCGGCGGTTGCCCACCGTCCAGGATTTTCTGGAAAAAGGGGGATCCC CAGAGGAGCAGTGGCAGCAGGTGGAGATCCCGGCTGCCGTTCGCGTAAGCGGGACGGAGTCCTTAGAGGAAGAACGGCTG CGCCGGCTGTACAGTCAGCCCCCCCTACTGCAGGTGCGGGATCTGCGAACCCACTACGCCGTCCGTCGAGGGCCATTTGG CCGCCAGGTGGGCGAGATCCGAGCTGTGGATGGGATCAGCTTTGACCTCTACCCCGGAGAGACCTTGGGGCTGGTGGGAG AGTCCGGCTGCGGCAAAACCACCCTGGGGCGAACCCTGTTGCGCCTGGTCCGTGCCAGCTCTGGCCAGGTGATCTACGAC GGCGAGGAGCTGCTCCGCTTGCCGCCCCAACGCTTACGTCGTCTCCGCCGCGAGATTCAGCTGATCTTTCAGGATCCGGC AGCCTCACTGGATCCGCGCATGAGTGTGGGAGCCAGCGTCATAGAGCCAATGGCCCTGCACGGGATTGGGAGAAATGCTG CTGAGCGACGAGCACGGGCCCAACGCCTGTTTGAACGGGTAGGGTTGGATCCGGAAGCGCTGGATCGCCTGCCCCACCAG TTTTCCGGAGGACAGCGGCAGCGGATCTGTATTGCCCGCGCCCTGGCCTCGGAGCCCCGCCTGATCGTCTGCGATGAGGC AGTGTCTTCCCTGGATGTCTCCGTGCAGGCCCAGGTGCTGAACTTGCTCAAGGATCTGCAGGAGGAACTGGGGTTGGCCT ACCTGTTCATCTCCCACGACCTGAGCGTGGTCAAGTTCATGAGCGACCGCATCATGGTCATGAACCGGGGCCGCATCGAA GAGCTTGGCCCCGCCTCCCAGATCTACCAGCAGCCGCAGCAGGACTACACCCGCCGCCTCATCGCCGCGTTCGCGCCAGC GGTGCGGAGCACTTCCCCCAAAGGGAGATCCGTTCGCGATAGCGGGCCGTAG Protein sequence : MTEAVSTADSALLTVQGLRVFLPSRAAGEPSGSPVVDGLSFQIGIGQTLGLVGESGSGKTMTALTLIDLLPSSARVEGKI LFKGPDGTVDWLQLDPRQRRRYRGSQIAMIFQEPSTALNPLYTCGQQLQETLRANTSLSPAEIRAQAIRLFEEVQLSPQM LERYPHQLSGGQIQRAAIACAIASNPQLLIADEPTTALDVTVQAEILRLLWELQQHRQMAILFITHDLNLVAELADQVVV MRRGQAVEQGSVEQIFRDPQHPYTRGLLACRPVLERRLRRLPTVQDFLEKGGSPEEQWQQVEIPAAVRVSGTESLEEERL RRLYSQPPLLQVRDLRTHYAVRRGPFGRQVGEIRAVDGISFDLYPGETLGLVGESGCGKTTLGRTLLRLVRASSGQVIYD GEELLRLPPQRLRRLRREIQLIFQDPAASLDPRMSVGASVIEPMALHGIGRNAAERRARAQRLFERVGLDPEALDRLPHQ FSGGQRQRICIARALASEPRLIVCDEAVSSLDVSVQAQVLNLLKDLQEELGLAYLFISHDLSVVKFMSDRIMVMNRGRIE ELGPASQIYQQPQQDYTRRLIAAFAPAVRSTSPKGRSVRDSGP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 2e-79 | 41 |
