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Name : ureC (CYB_0023) Accession : YP_476287.1 Strain : Synechococcus sp. JA-2-3B'a(2-13) Genome accession: NC_007776 Putative virulence/resistance : Virulence Product : urease subunit alpha Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0804 EC number : 3.5.1.5 Position : 28679 - 30397 bp Length : 1719 bp Strand : + Note : ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alp DNA sequence : ATGACCCTAGAGATTCCCCGTCGCCAATACGTCAGCAACTACGGCCCCACCGTAGGGGATCGGGTGCGCCTGGCGGATAC CGAACTGATCATCGAGGTGGAGGAGGATTTCACCACCTACGGCGAGGAGATTAAGTTTGGGGGCGGCAAAACCATCCGCG ATGGCATGGGGCAATCGCCGACGGCCACCCGCGCCAACGGGGCCTTGGATCTGGTGATCACCAACGCCCTGATCCTGGAC TGGTGGGGCATTGTCAAGGCGGATGTGGGCATTCGCGATGGCTACATTGTCGGCATTGGCAAAGCCGGCAACCCCAACAT CCAAGCGGGGGTGACGCCGGGCATGGTGGTTGGCCCCAGCACTGAGGTGATTGCCGGGGAAAACCTGATCCTGACAGCGG GCGGGATCGATGCCCATGTGCATTTCATCTGTCCGCAGCTGTGCGAGTTTGCCATCGCCTCGGGAGTGACCACCCTTTTG GGGGGCGGAACTGGGCCGGCCACAGGCAGCAACGCCACCACCTGCACCCCTGGAGCTTGGAACTTGGGCAAGATGTTGCA GGCGGCGGAGGGGTTCCCCGTCAATTTGGGCTTTTTTGGCAAGGGAAACGCGGCTTTTCCCGCAGCTTTGCGGGAACAGG TGGAAGCGGGGGCCTGCGGCCTCAAGATCCACGAAGATTGGGGATCCACGCCGGCGGTGATCGACAGCTGTTTGCAGGTC GCGGATGAGTACGACATCCAAACCCTCATCCACACCGATACCTTAAATGAGTCCGCTTTCGTGGAGGACACTATCGCTGC CATCAATGGCCGCACCATTCACACCTTCCACACCGAAGGGGCCGGGGGTGGGCATGCCCCCGATATCATTCGCATTGCCT CTGAGCCCAACGTGCTGCCCAGCTCCACCAATCCCACCCGCCCCTTTACCCGCAACACCATCGAAGAGCATCTGGACATG CTGATGGTGTGTCACCACCTGAGCAAGAATGTGCCGGAGGATATTGCTTTTGCCGAAAGCCGCATTCGTCCCCAAACCAT CGCCGCCGAAGACATCTTGCATGACATGGGGGTGTTCAGCATCATCTCTTCCGACTCGCAGGCCATGGGCCGGGTGGGGG AGGTGATCATCCGCACTTGGCAGACGGCTCACAAGATGAAGGTGCAGCGGGGGCCTTTGCCACAAGACAGCAGCCGCAAC GACAACTTCCGGGCCAAGCGTTACGTAGCCAAGTACACCATCTGCCCTGCCATCGCCCAAGGACTCAGCCACGTCATCGG GTCGGTGGAGGTGGGAAAGCTGGCGGATCTGTGTCTATGGAAGCCGGCCTTTTTTGGGGTTAAGCCGGAAATCGTCCTGA AGGGGGGCCTGATTGCCTACGCCCAGATGGGGGATCCCAATGCTTCCATTCCGACCCCGCAGCCGGTGTACCCTCGCCCC ATGTTCGGCAGCTTTGGCCGCGCCTTGACCGAGACCAGCCTCCTCTTTGTCTCCCAGGCTGCCCTAGACCTGGGGATCCC GGAAAAACTGGGGATCCAGCGCCGGGCCGTAGCGGTGAAAAATTGCCGCGAGATCGGCAAAGCGGATTTGAAACTCAATA CCGCCACTCCCCACATTGAGGTGAACCCGGAGACCTATGAAGTGCGGGCCGATGGAGAATTGCTCACCTGCGAGCCGGCA GAGGTGCTGCCCATGGCGCAGCGGTATTTTCTGTTCTAA Protein sequence : MTLEIPRRQYVSNYGPTVGDRVRLADTELIIEVEEDFTTYGEEIKFGGGKTIRDGMGQSPTATRANGALDLVITNALILD WWGIVKADVGIRDGYIVGIGKAGNPNIQAGVTPGMVVGPSTEVIAGENLILTAGGIDAHVHFICPQLCEFAIASGVTTLL GGGTGPATGSNATTCTPGAWNLGKMLQAAEGFPVNLGFFGKGNAAFPAALREQVEAGACGLKIHEDWGSTPAVIDSCLQV ADEYDIQTLIHTDTLNESAFVEDTIAAINGRTIHTFHTEGAGGGHAPDIIRIASEPNVLPSSTNPTRPFTRNTIEEHLDM LMVCHHLSKNVPEDIAFAESRIRPQTIAAEDILHDMGVFSIISSDSQAMGRVGEVIIRTWQTAHKMKVQRGPLPQDSSRN DNFRAKRYVAKYTICPAIAQGLSHVIGSVEVGKLADLCLWKPAFFGVKPEIVLKGGLIAYAQMGDPNASIPTPQPVYPRP MFGSFGRALTETSLLFVSQAALDLGIPEKLGIQRRAVAVKNCREIGKADLKLNTATPHIEVNPETYEVRADGELLTCEPA EVLPMAQRYFLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 9e-172 | 65 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 9e-172 | 65 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 6e-163 | 63 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 1e-161 | 63 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 6e-163 | 63 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 6e-163 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureC | YP_476287.1 | urease subunit alpha | VFG0270 | Protein | 4e-165 | 65 |
