Gene Information

Name : CYB_0174 (CYB_0174)
Accession : YP_476437.1
Strain : Synechococcus sp. JA-2-3B'a(2-13)
Genome accession: NC_007776
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 186762 - 187454 bp
Length : 693 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGCCAGAGCCTGAACCCTCTTCTGCCCACATTCTGGTGATCGAAGATGAAGCTAAGCTGGCTCGTTTTGTGGAAACGGA
GCTGACCTGTGAGGGATATCGAGTCAGCGTAGCCAGCGATGGCATGGCCGGGTTGAGGGCAGCCTGCGACCAAAACCCCG
ACTTGGTGCTGTTGGACTGGATGTTGCCCGGCATCTCAGGTTTGGAAATTTGTCGGCGACTGCGCTCAACGGGCAACCGC
GTGCCGGTGGTGTTGATGACCGCCAGAGATGAGGTGTCGGATCGAGCAGCGGGGTTGGATGCCGGGGCGGATGATTACGT
GGTCAAACCCTTCAGCATTCAGGAGCTGCTGTCTCGGATACGGATCTATTTGCGGCAGCCAAGGCGATCCCGCGACGGCC
AGTTGGTGTTCATGGATCTGATTCTGGATCCCGTAACGCGGGAGGTAACCCGGGGAGAGCGACAGGTGGAGCTGACGGCC
AAAGAATACGACCTGTTGCGCTACTTGATGGAACACCCCCGTCAGGTGCTCACCCGCCAACAGATCTTAGAGCATGTGTG
GGGCTGCGACTTCACGGGCGACTCCAATATCATCGAGGTCTATATTCGCTACTTGCGCCTCAAGATCGAAGGCCCAGGGG
AGAAGCGCCTTATCCAGACGGTGCGCGGGGTAGGCTACGTGTTGCGCGATTGA

Protein sequence : 
MPEPEPSSAHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLEICRRLRSTGNR
VPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRRSRDGQLVFMDLILDPVTREVTRGERQVELTA
KEYDLLRYLMEHPRQVLTRQQILEHVWGCDFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVLRD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-31 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-30 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CYB_0174 YP_476437.1 DNA-binding response regulator AE015929.1.gene1106. Protein 3e-39 49
CYB_0174 YP_476437.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 6e-42 48
CYB_0174 YP_476437.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 6e-42 48
CYB_0174 YP_476437.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 6e-42 48
CYB_0174 YP_476437.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 6e-42 48
CYB_0174 YP_476437.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 6e-42 48
CYB_0174 YP_476437.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 6e-42 48
CYB_0174 YP_476437.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 6e-42 48
CYB_0174 YP_476437.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 6e-42 48
CYB_0174 YP_476437.1 DNA-binding response regulator HE999704.1.gene1528. Protein 1e-40 48
CYB_0174 YP_476437.1 DNA-binding response regulator BAC0083 Protein 6e-35 44
CYB_0174 YP_476437.1 DNA-binding response regulator BAC0197 Protein 2e-33 44
CYB_0174 YP_476437.1 DNA-binding response regulator BAC0347 Protein 7e-33 43
CYB_0174 YP_476437.1 DNA-binding response regulator BAC0125 Protein 2e-37 43
CYB_0174 YP_476437.1 DNA-binding response regulator BAC0308 Protein 1e-35 43
CYB_0174 YP_476437.1 DNA-binding response regulator AE000516.2.gene3505. Protein 3e-32 43
CYB_0174 YP_476437.1 DNA-binding response regulator BAC0111 Protein 7e-36 42
CYB_0174 YP_476437.1 DNA-binding response regulator BAC0638 Protein 4e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CYB_0174 YP_476437.1 DNA-binding response regulator VFG1390 Protein 4e-48 51
CYB_0174 YP_476437.1 DNA-binding response regulator VFG1389 Protein 2e-34 45
CYB_0174 YP_476437.1 DNA-binding response regulator VFG0596 Protein 1e-31 44
CYB_0174 YP_476437.1 DNA-binding response regulator VFG1386 Protein 2e-43 44