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Name : clpC (CYA_0656) Accession : YP_474132.1 Strain : Synechococcus sp. JA-3-3Ab Genome accession: NC_007775 Putative virulence/resistance : Virulence Product : Clp protease, ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 664229 - 666703 bp Length : 2475 bp Strand : + Note : identified by similarity to SP:P37571; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724 DNA sequence : ATGTTTGAACGCTTTACGGAAAAAGCCATCAAGGTGATCATGCTGGCCCAGGAGGAGGCCAGACGGTTGGGTCACAATTT CGTTGGCACCGAGCAAATCTTGTTGGGGTTAATCGGCGAGGGCACTGGGGTCGCCGCCAAAGTTCTCAAGTCCATGGGAG TGAACTTGAAGGACGCCCGCATTGAAGTCGAGAAAATTATTGGCCGGGGATCCGGCTTTGTGGCCGTCGAGATCCCTTTC ACTCCCCGCGCCAAGCGAGTGCTGGAGCTCTCCTTAGAAGAAGCTCGCCAGCTCGGCCACAACTACATCGGCACTGAGCA CCTGCTCCTGGGCCTGATCCGCGAAGGGGAAGGGGTAGCTGCTCGCGTCCTGGAAAACCTGGGGGTGGATCTGTCCAAGG TGCGCACCCAGGTGATCCGCATGTTGGGCGAGACCGCCGAAGTGACGGCGGGGGGTGGGTCTTCCAGCCGCACCAAGACG CCAACCCTGGACGAATTCGGCTCCAACCTCACCCAATTGGCCCAAGAGGGCAAGCTGGATCCCGTGGTGGGTCGGACGCG GGAGATCGAGCGCGTGATCCAGATCTTGGGCCGCCGCACCAAGAACAACCCCGTTCTTATCGGCGAGCCGGGCGTGGGCA AGACCGCCATCGCCGAAGGTCTGGCCCAGCGCATCGTGCAGGGGGACGTGCCCGACATCTTGGCCGACAAGCGGGTGGTC AGCCTGGATATCGGCCTGTTGGTGGCTGGCACCAAGTACCGCGGCGAGTTTGAGGAGCGCCTCAAGAAGATCATGGATGA GATCCGCAACGCCGGCAACATCATCCTGGTCATCGACGAGGTGCACACCCTCATTGGAGCCGGGGCTGCCGAAGGGGCCA TCGATGCCGCCAACATCCTCAAGCCGGCTTTGGCCCGCGGCGAGCTGCAGTGCATCGGCGCCACCACGCTGGATGAGTAC CGCAAGCACATCGAGCGGGATGCCGCCCTGGAGCGTCGCTTCCAGCCCATCATGGTGGGCGAGCCGAGCGTTTCAGAGAC GATCGAGATCCTGTTTGGCCTGCGGGAGCGCTACGAGCAGCACCACAAGCTGAAGATCTCCGACGCGGCCTTGGAGGCAG CGGCCAAGCTGGCCGACCAATACATCTCTGACCGCTTCCTGCCGGACAAGGCCATCGACCTCATCGACGAGGCGGCTTCG CGGGTGCGCCTGATCAACTCGCAACTGCCGCCGGCGGCGCGGGAGCTGGATCAGGAGCTGCGGCGGGTGCTTAAGGAGAA GGATGCCGCGGTGCGGGCCCAAGACTTCGACAGGGCCGGCGAGCTGCGGGATCGGGAGATGGAGATCAAGCAGCAGATCC GCGCCATTGCGGCGGCCAAAAAAGCCGAGGAAAGCAGCCGCCAAGAGATGCCAGAGGTCACCGAAGAGGACATCGCCCAA GTGGTGAGCGCCTGGACGGGCGTGCCAGTGGCCAAGCTGACCGAGAGCGAGTCGGAGAAGCTGCTGCACATGGAGGAAAC CCTGCACCAGCGCATCATCGGCCAAGATGAGGCGGTGCGGGCCATCTCGCGGGCCATTCGTCGGGCTCGCGTGGGGCTGA AAAACCCCAACCGTCCCATCGCCAGCTTCATCTTCTCCGGCCCAACAGGGGTAGGCAAAACCGAGCTGACCAAAGCCCTG GCGGCCTACTTCTTCGGCTCCGAGTCGGCTATGATCCGCCTCGACATGTCGGAGTACATGGAGCGGCACACGGTCAGCAA GCTGATCGGATCCCCGCCCGGATATGTCGGCTACAACGAGGGGGGGCAGCTTACGGAAGCGGTGCGGCGCCGTCCCTACA CGGTGGTGCTCTTCGATGAGATCGAGAAGGCCCACCCGGACGTGTTCAACCTGCTGCTGCAGATCCTGGAGGACGGCCGC CTGACCGACGCCAAGGGCCGCACGGTGGACTTCAAAAACACCCTGATCGTGATGACCTCGAACATTGGCTCGAAGGTCAT CGAGAAGGGTGGTGGCAGCCTCGGCTTCGAGTTCAACACCAACGACGAAGATGCGAACTACAACCGCATCCGCAACTTGG TGCACGAGGAGCTGAAGCAGTACTTCCGCCCCGAGTTCCTCAACCGGGTGGACGAGATCATCGTCTTCCGGCAACTGACC AAGGAGGAAGTGAAGCAGATCGCCGACATCCTGCTCAAGGAAGTGTTCGACCGCATGAAGGAGAAGAAGATTTACCTCAC GGTCAGCGATCGCTTCAAGGATCTGCTGGTGGAGGAGGGCTACAACCCCAGCTATGGGGCACGTCCGCTGCGCCGTGCTA TTCAGCGCCTGTTGGAAGACATCCTGGCAGAAGAGATCTTGACTGGCCACGTCAAAGAGGGATCAGAAGTCCTCATCGAT GTGGACGAGGAGCGTAAGCCCAAGGTGCTGGTCACGGAGCCGGAGCGGGTGCTCTTGCCCCAGGGAGCGGAGTAA Protein sequence : MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVTAGGGSSSRTKT PTLDEFGSNLTQLAQEGKLDPVVGRTREIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIVQGDVPDILADKRVV SLDIGLLVAGTKYRGEFEERLKKIMDEIRNAGNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEY RKHIERDAALERRFQPIMVGEPSVSETIEILFGLRERYEQHHKLKISDAALEAAAKLADQYISDRFLPDKAIDLIDEAAS RVRLINSQLPPAARELDQELRRVLKEKDAAVRAQDFDRAGELRDREMEIKQQIRAIAAAKKAEESSRQEMPEVTEEDIAQ VVSAWTGVPVAKLTESESEKLLHMEETLHQRIIGQDEAVRAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAL AAYFFGSESAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNLLLQILEDGR LTDAKGRTVDFKNTLIVMTSNIGSKVIEKGGGSLGFEFNTNDEDANYNRIRNLVHEELKQYFRPEFLNRVDEIIVFRQLT KEEVKQIADILLKEVFDRMKEKKIYLTVSDRFKDLLVEEGYNPSYGARPLRRAIQRLLEDILAEEILTGHVKEGSEVLID VDEERKPKVLVTEPERVLLPQGAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_474132.1 | Clp protease, ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 60 |
| clpC | YP_474132.1 | Clp protease, ATP-binding subunit ClpC | VFG0080 | Protein | 3e-140 | 51 |
