Gene Information

Name : CYA_2699 (CYA_2699)
Accession : YP_476071.1
Strain : Synechococcus sp. JA-3-3Ab
Genome accession: NC_007775
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2714420 - 2715112 bp
Length : 693 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGCCAGAACCGGAATCCTCCTCAGCCCACATTCTGGTGATCGAAGATGAGGCCAAACTGGCCCGTTTCCTGGAAACCGA
GCTGGCCTATAGGGGATATCGGGTGAGTGTGGTCGGCGATGGCACGGTGGCCTTGGCGGCAGCCCGCGACCAGAACCCCG
ATTTGGTGCTGCTGGACTGGATGTTGCCCGGGATCTCGGGGTTGGAAGTTTGTCGGCAGTTGCGCTTGACGGGCAACCGC
GTGCCCGTGGTGCTGATGACTGCCAGCGACGAGGTGGCAGATCGGGTGGCAGGTCTGGATGCTGGGGCAGATGACTATGT
GGTCAAACCCTTTAGCCTTCAGGAGTTGCTGGCGCGGATACGGATCTATCTGCAGCCCCCCAAGGGATCTGGCGACAGCC
GGTTGGTGTTTATGGATCTGACGCTGGATCCGGTGACACGCCAGGCAAGCCGGGGAGAGCGACAGGTGGAGCTGACGGCC
AAGGAATACGACTTGTTGCGCTACCTGATGGAACACCCCCGCCAGGTGCTCACACGCCAACAAATTTTGGAGCATGTGTG
GGGCTATGACTTTACAGGCGATTCCAACATCATCGAGGTCTATATTCGCTACTTGCGTCTTAAGATCGAAGGCCCAGGGG
AGAAGCGCCTGATCCAGACGGTGCGCGGGGTAGGCTACGTGTTGCGCGAATAG

Protein sequence : 
MPEPESSSAHILVIEDEAKLARFLETELAYRGYRVSVVGDGTVALAAARDQNPDLVLLDWMLPGISGLEVCRQLRLTGNR
VPVVLMTASDEVADRVAGLDAGADDYVVKPFSLQELLARIRIYLQPPKGSGDSRLVFMDLTLDPVTRQASRGERQVELTA
KEYDLLRYLMEHPRQVLTRQQILEHVWGYDFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVLRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-35 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-34 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CYA_2699 YP_476071.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 3e-45 47
CYA_2699 YP_476071.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 3e-45 47
CYA_2699 YP_476071.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 3e-45 47
CYA_2699 YP_476071.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 3e-45 47
CYA_2699 YP_476071.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 3e-45 47
CYA_2699 YP_476071.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 3e-45 47
CYA_2699 YP_476071.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 3e-45 47
CYA_2699 YP_476071.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 3e-45 47
CYA_2699 YP_476071.1 DNA-binding response regulator AE015929.1.gene1106. Protein 2e-42 47
CYA_2699 YP_476071.1 DNA-binding response regulator HE999704.1.gene1528. Protein 3e-44 46
CYA_2699 YP_476071.1 DNA-binding response regulator BAC0083 Protein 9e-41 46
CYA_2699 YP_476071.1 DNA-binding response regulator BAC0197 Protein 8e-38 44
CYA_2699 YP_476071.1 DNA-binding response regulator AE000516.2.gene3505. Protein 6e-40 44
CYA_2699 YP_476071.1 DNA-binding response regulator NC_002516.2.879194.p Protein 9e-29 43
CYA_2699 YP_476071.1 DNA-binding response regulator BAC0125 Protein 4e-42 43
CYA_2699 YP_476071.1 DNA-binding response regulator BAC0308 Protein 4e-39 42
CYA_2699 YP_476071.1 DNA-binding response regulator BAC0347 Protein 2e-35 41
CYA_2699 YP_476071.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 2e-37 41
CYA_2699 YP_476071.1 DNA-binding response regulator BAC0638 Protein 6e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CYA_2699 YP_476071.1 DNA-binding response regulator VFG1390 Protein 5e-55 53
CYA_2699 YP_476071.1 DNA-binding response regulator VFG1389 Protein 3e-41 46
CYA_2699 YP_476071.1 DNA-binding response regulator VFG1386 Protein 4e-49 45
CYA_2699 YP_476071.1 DNA-binding response regulator VFG0596 Protein 3e-35 43