|
Name : lpsB2 (RHE_PB00002) Accession : YP_471773.1 Strain : Genome accession: NC_007763 Putative virulence/resistance : Virulence Product : dTDP-glucose 4,6-dehydratase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1051 - 3018 bp Length : 1968 bp Strand : + Note : Similar to lpsB2 [Rhizobium etli] and lpsB [Rhizobium leguminosarum bv viciae 3841]; Similar to entrez-protein:AAB66669.1; location:bacterial inner membrane Psort-Score: 0.3060 DNA sequence : ATGCCGCGTGCTGCCAAACGCGCTCTCGCCTTGCTGGTGGATTCCGGTCTTTGTGTCCTGACGATCTGGCTGGCTTATTG CTTCCGTCTGAACGAATGGACGGTGCTAACAGGCGTGCAGTGGTTGCCGGTCTTCGTTTCCTTGTGCATGGCGCTTCCCA TCTTCATCGTCATGGGCATGTATCGGGCGATCTTCCGTTATGCCAACATGGCCGCTTTCATTGCCGTTCTAAAAGCCATT GCGATCTACGGTGTCGCCTTCATGACGATATTTACGGCGCTCAGCGTCCCGGGCGTTCCGAGAACCGTCGGCATTCTCCA GCCCTTCCTGCTGCTGATTGCGATCGGCCTGTCGCGGTTGGGTATCCGTTATTGGCTCGGGGATACTTACCAGCGTATCC TTCACCAGAACACGCTCGCCAAGGTGTTGATCTATGGGGCGGGAAATGCCGGGCGGCAACTCGCCGGCGCTCTGACGAAC AGCGCCGAACTCAATGTCGTCGGCTACCTCGATGATGATCCGCGCCTTAAGGGCGGCATCATGGGCGGTTTGCCGATCTA TGACCCGTCGGATCTTCCGGTGCTCGCCGAAACACTTGGCGTGCACAACGTGCTTCTTGCTCTTCCATCCGCATCGCGGC AGCGTCGCAATGAAATTCTCGAGCATATCCGCAAAGCCAGGGTGAACGTCCGGACTTTGCCGGATCTCACCGCTCTGGCT CAAGGACGAGTCGCGGTTTCCGATATTCGTGAGCTGGAGATCGAAGACCTGCTCGGCAGGGAAGCGGTTGCGCCGCGGCA AGAGCTGCTCGACAAGGCGATGCGCAACAAGGTGGTGATGGTCACGGGTGCCGGCGGCTCCATCGGCGGCGAGTTATGCC GCCAGATTCTGCGCAACGCGCCTTCAAGCCTCATCCTCATAGATCAGAACGAGTTTGCACTTTATAATATTCATGCCGAA TTGCTGAAGCTGGCCGAAGTTTACAAGCATGAGGGGCTGCAGATCGTGCCGATCCTTTGTTCCGTCCGCGACCAGGATCG CATGGAACATATCATGGAAAGCTGGCGGCCTCAGACGCTTTATCACGCCGCCGCTTACAAGCATGTGCCTCTCGTCGAAC ACAACGCCGTGGAAGGCATCAAGAACAATGTCATGGGGACATTGATCACCGCACGTGCGGCAAATAAATACGGCGTTTCG AATTTCGTGCTGATCAGCACCGACAAAGCCGTGCGCCCGACGAATGTGATGGGTGCCAGCAAGAGGCTGGCGGAGATGGT GCTGCAGGCGCTTGCGGCAGAGCTGACCGCTGACAGACTGCGGACAAATTTCTCGATGGTCCGCTTCGGAAATGTCCTCG GTTCCTCCGGATCCGTCGTGCCGCTGTTCCGGCAGCAGATCAAGGAAGGCGGCCCGGTTACCCTGACGCATCCGAAGATA ACCCGCTATTTCATGACCATTTCGGAAGCCTCGCAACTTGTCATCCAGGCGGGCGCCATGGCCGAGGGCGGCGATGTTTT CCTGCTCGATATGGGCGAGCCCGTCCGCATTGCGGATCTCGCCCGCAAGATGGTCGAACTGTCCGGATTGACCGTCCGGG ACGTGGATAATCCAGAGGGGGACATCGAGCTTGCCGTTACCGGCCTGCGGCCCGGCGAGAAGCTTTATGAAGAACTGCTG ATCGGCGATAACCCCGAGACAACTGAACATCCGCGGATTATGAAGGCGCGCGAGGATTTCCTGTTCTGGGCAGAACTTTC GAAGAAGCTCAACTCGCTCAATGCGTCGTTGGACCGAAACGACATGGTCGCGGCGCGCGCGACCTTGGCAGAACTCGTTT CCGGCTATTCCTCAACGGGCGAGGTTTCAGATCTTGCGTTCACCGGGGCCGAAACCAATCCGGCGCATGAAGATGTCAAC GCGCTAGCCTCAGGCGCAGGAAATCAGCTTCGAACCACAGGTGCATAG Protein sequence : MPRAAKRALALLVDSGLCVLTIWLAYCFRLNEWTVLTGVQWLPVFVSLCMALPIFIVMGMYRAIFRYANMAAFIAVLKAI AIYGVAFMTIFTALSVPGVPRTVGILQPFLLLIAIGLSRLGIRYWLGDTYQRILHQNTLAKVLIYGAGNAGRQLAGALTN SAELNVVGYLDDDPRLKGGIMGGLPIYDPSDLPVLAETLGVHNVLLALPSASRQRRNEILEHIRKARVNVRTLPDLTALA QGRVAVSDIRELEIEDLLGREAVAPRQELLDKAMRNKVVMVTGAGGSIGGELCRQILRNAPSSLILIDQNEFALYNIHAE LLKLAEVYKHEGLQIVPILCSVRDQDRMEHIMESWRPQTLYHAAAYKHVPLVEHNAVEGIKNNVMGTLITARAANKYGVS NFVLISTDKAVRPTNVMGASKRLAEMVLQALAAELTADRLRTNFSMVRFGNVLGSSGSVVPLFRQQIKEGGPVTLTHPKI TRYFMTISEASQLVIQAGAMAEGGDVFLLDMGEPVRIADLARKMVELSGLTVRDVDNPEGDIELAVTGLRPGEKLYEELL IGDNPETTEHPRIMKAREDFLFWAELSKKLNSLNASLDRNDMVAARATLAELVSGYSSTGEVSDLAFTGAETNPAHEDVN ALASGAGNQLRTTGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 9e-81 | 43 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-82 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lpsB2 | YP_471773.1 | dTDP-glucose 4,6-dehydratase | VFG0029 | Protein | 8e-109 | 49 |
| lpsB2 | YP_471773.1 | dTDP-glucose 4,6-dehydratase | VFG1300 | Protein | 5e-81 | 45 |
